Parker I I - OmicsDI

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Organisms

Homo sapiens (136)
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Organisms

Homo sapiens (3)
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Repository

biostudies-arrayexpress (106)
pride (54)
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Technology Type

Mass Spectrometry (54)
Shotgun proteomics (24)
Affinity purification coupled with mass spectrometry proteomics (18)
Bottom-up proteomics (11)
Mass spectrometry (7)
Data-dependent acquisition (7)
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Instrument Platform

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6470A Agilent QQQ (2)
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Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - - - micrOTOF-Q II ESI-Qq-TOF (Bruker) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS – negative - hilic (1)
Liquid Chromatography MS – positive - reverse phase (1)
MaXis (Bruker) (1)

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2012 (18)
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CHEBI ID

CHEBI:15351 (2)
CHEBI:15741 (2)
CHEBI:16108 (2)
CHEBI:18012 (2)
CHEBI:22660 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:32816 (2)
CHEBI:6650 (2)
CHEBI:141463 (1)
CHEBI:145681 (1)
CHEBI:15345 (1)
CHEBI:15422 (1)
CHEBI:15467 (1)
CHEBI:15531 (1)
CHEBI:15702 (1)
CHEBI:15721 (1)
CHEBI:15846 (1)
CHEBI:15978 (1)
CHEBI:15996 (1)
CHEBI:16027 (1)
CHEBI:16065 (1)
CHEBI:16335 (1)
CHEBI:16356 (1)
CHEBI:16449 (1)
CHEBI:16474 (1)
CHEBI:16546 (1)
CHEBI:16761 (1)
CHEBI:16856 (1)
CHEBI:16908 (1)

Metabolite Name

Alpha-ketoglutarate (2)
Citrate (2)
161.096@8.03 (1)
191.143@8.09 (1)
2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA) (1)
2-b-D-glucopyranosyloxy-4,7-dimethoxy-1,4-benzoxazin-3-one (HDMBOA glucoside) (1)
2-b-D-glucopyranosyloxy-4-hydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA glucoside) (1)
2-phosphoglycolate (1)
205.08@5.21 (1)
2HNG (enolpyruvyl-N-glutamic acid) (1)
3-phosphoglycerate (1)
363.069@5.95 (1)
4-hydroxybenzoate (1)
440.0420@4.43min (1)
471.083@4.43 (1)
6-phosphogluconic acid (1)
ADP (1)
AMP (1)
ATP (1)
Acetoacetyl-CoA (1)
Acetyl-CoA (1)
Adenosine (1)
Alanine (1)
Arginine (1)
Aspartate (1)
DHAP (1)
Dihydroxyacetone phosphate (1)
Fumarate (1)
GDP (1)
GMP (1)

First Public Date

2026 (3)
2019 (1)
2018 (1)
2016 (1)

Study type

Transcription profiling by array (67)
RNA-seq of coding RNA (15)
ChIP-seq (8)
Comparative genomic hybridization by array (5)
Unknown experiment type (3)
Genotyping by array (2)
Other (2)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
DNA-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (289)
2021 (263)
2023 (224)
2024 (201)
2025 (195)
2020 (186)
2018 (165)
2019 (157)
2017 (125)
2015 (109)
2016 (95)
2014 (83)
2013 (65)
2012 (65)
2011 (54)
2010 (51)
2026 (31)
2009 (27)
2008 (20)
2007 (13)
2006 (10)
2005 (10)
2004 (4)
2003 (3)
2002 (1)
2001 (1)
1999 (1)

Lab affiliation

The University of Melbourne (5)
University of Oxford (4)
Vividion Therapeutics (4)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
La Trobe University, Melbourne, Australia (2)
The University of Sydney (2)
Advanced Science Research Center City University of New York (1)
Biomedical Research, Novartis Pharma AG (1)
Bristol Myers Squibb (1)
CVRTI, University of Utah (lab head) (1)
Cambridge Centre for Proteomics, Department of Biochemistry, University of Cambridge, Cambridge, CB2 1QR UK (1)
Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia. (1)
Centre for High-Throughput Biology, University of British Columbia (1)
Centre for Proteomic Research B85, Life Sciences Building, University of Southampton, University Road , Highfield Southampton, Hants. SO17 1BJ United Kingdom (1)
Department of Cardiology, Boston Children’s Hospital, Harvard Medical School (1)
Department of Cell Biology and Physiology, Washington University in St Louis, St Louis, Missouri, USA; Department of Otolaryngology/Head and Neck Surgery, Washington University School of Medicine, St Louis, Missouri, USA. (1)
Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, Sheffield, UK (1)
Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia (1)
Department of Pharmacology, University of North Carolina Chapel Hill School of Medicine, Chapel Hill, NC USA (1)
Environmental Toxicology, University of California Davis (1)
Jenner Institute Antigen Discovery Group University of Oxford (1)
La Trobe University (1)
Novartis Institutes for BioMedical Research, Basel, Switzerland (1)
Nuffield Department Medicine, University of Oxford, Oxford, OX3 7BN, United Kingdom. (1)
Nuffield Department of Medicine, Centre for Cellar and Medical Physiology, University of Oxford, OX3 7BN (1)
Parker Institute for Cancer Immunotherapy, Center for Cellular Immunotherapies, Perelman School of Medicine, University of Pennsylvania, South Pavilion Tower, Building 421, Rm 8-103 3400 Civic Center Blvd. Philadelphia, PA 19104-5157 (1)
Peter MacCallum Cancer Centre, Melbourne, Australia Department of Anatomy and Physiology, The University of Melbourne, Melbourne, VIC, Australia (1)
Professor UCSD Departments of Medicine and Cellular and Molecular Medicine (1)
School of Natural Sciences, Macquarie University, Sydney, Australia Biomolecular Discovery Research Centre, Macquarie University, Sydney, Australia Institute for Glyco-core Research (iGCORE), Nagoya University, Nagoya, 464-8601, Japan (1)
Team Lead in Proteomics Head of the Proteomics Research Translational Technology Platform UCL Cancer Institute, Paul O’Gorman Building 72 Huntley Street, London, WC1E 6DD, UK (1)

Tags

xref:PubMed:42203886 (1)
xref:PubMed:29909548 (1)
xref:PubMed:31494035 (1)
xref:EuropePMC:PMC8131884 (1)
xref:EuropePMC:PMC5394120 (1)

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Nucleases Encoded by Integrated Elements CJIE2 and CJIE4 Inhibit Natural Transformation of Campylobacter jejuni

The species Campylobacter jejuni is naturally competent for DNA uptake; nevertheless, nonnaturally transformable strains do exist. For a subset of strains we previously showed that a periplasmic DNase, encoded by dns, inhibits natural transformation in C. jejuni. In the present study, genetic factor...

ORGANISM(S): Campylobacter jejuni

2009-11-13 | E-GEOD-18399 | biostudies-arrayexpress

Respiratory syncytial virus inhibits Type I Interferon signaling to maintain HLA-DM expression in CD1c + Dendritic cells

PRJNA1474987 | ENA

Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci

Identifying cis-regulatory elements is important to understand how human pancreatic islets modulate gene expression in physiologic or pathophysiologic (e.g., diabetic) conditions. We conducted genome-wide analysis of DNase I hypersensitive sites, histone H3 lysine methylation marks (K4me1, K4me3, K7...

ORGANISM(S): Homo sapiens

2010-11-02 | E-GEOD-23784 | biostudies-arrayexpress

A comprehensive apoptotic assessment of niloticin in cervical cancer cells: a tirucallane-type triterpenoid from Aphanamixis polystachya (Wall.) Parker.

Not available

S-EPMC11378019 | biostudies-literature

Type I Interferon Signaling via the EGR2 Transcriptional Regulator Potentiates CAR T Cell-Intrinsic Dysfunction.

Not available

S-EPMC10330003 | biostudies-literature

Identification of neoantigens in oesophageal adenocarcinoma

We present data from tissues of seven oesophageal adenocarcinomas of CD4 and CD8 T cell epitopes eluted from the cell surface using mass spectrometry (immunopeptidomics) of presented HLA bound peptides.This dataset forms part of the publication:Nicholas, B., Bailey, A., McCann, K.J., Wood, O., Walke...

ORGANISM(S): Homo sapiens (Human)

2022-09-27 | PXD031108 | Pride

MitoPlex: A Targeted Multiple Reaction Monitoring Assay for Quantification of a Curated Set of Mitochondrial Proteins

Mitochondria are the major source of cellular energy (ATP), as well as critical mediators of widespread functions such as cellular redox balance, apoptosis, and metabolic flux. Methods to quantify mitochondrial content are limited to low throughput immunoassays, measurement of mitochondrial DNA, or ...

ORGANISM(S): Mus Musculus

2020-04-09 | PXD017884 | panorama

KRAS Epitope Identification Immunopeptidomics

Utilizing computational epitope prediction and biochemical assays we predicted and identified high-affinity and/or high-stability KRAS peptides to high prevalence HLA class I molecules. Using single HLA class I allele lines and tumor cell lines in conjunction with MS spectrometry, selected mKRAS epi...

ORGANISM(S): Homo sapiens (Human)

2021-05-29 | PXD024412 | Pride

Cancer immunotherapy Epitope T cells Tcr

New species in the sponge genus Tsitsikamma (Poecilosclerida, Latrunculiidae) from South Africa.

Not available

S-EPMC6746741 | biostudies-literature

Antioxidant activity of polyphenolic compounds isolated from ethyl-acetate fraction of Acacia hydaspica R. Parker.

Not available

S-EPMC5785459 | biostudies-literature

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