Pattern-triggered immunity

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Unknown (466)
Genomics (87)
Transcriptomics (85)
Proteomics (46)
Methylation profiling (1)
Metabolomics (1)

Organisms

Arabidopsis thaliana (49)
Homo sapiens (9)
Mus musculus (7)
Solanum lycopersicum (6)
Pseudomonas syringae pv. tomato str. DC3000 (6)
Oryza sativa (4)
Glycine max (3)
Triticum aestivum (2)
Sorghum bicolor (2)
Oryza sativa Japonica Group (2)
Nicotiana tabacum (2)
Fraxinus excelsior (1)
Thlaspi arvense (1)
Xanthomonas vasicola (1)
Cardamine hirsuta (1)
Eutrema salsugineum (1)
Chryseobacterium sp. Leaf404 (1)
Burkholderia sp. Leaf177 (1)
Pedobacter sp. Leaf176 (1)
Rhizobium sp. Leaf155 (1)
Plantibacter sp. Leaf1 (1)
Flavobacterium sp. Root935 (1)
Arthrobacter sp. Soil763 (1)
Acinetobacter sp. Leaf130 (1)
Exiguobacterium sp. Leaf187 (1)
Saccharum officinarum (1)
Brassica rapa subsp. pekinensis (1)
Capsella rubella (1)
Hordeum vulgare (1)
Nicotiana benthamiana (1)

Organisms

Arabidopsis thaliana (25)
Pseudomonas syringae pv. tomato str. DC3000 (6)
Solanum lycopersicum (3)
Oryza sativa Japonica Group (3)
Nicotiana benthamiana (2)
Oryza sativa (2)
Sorghum bicolor (2)
Homo sapiens (2)
Kaloula pulchra (1)
Saccharum officinarum (1)
Thlaspi arvense (1)
Hordeum vulgare (1)
Brachypodium distachyon (1)
Brassica rapa subsp. pekinensis (1)
Ipomoea batatas (1)
Triticum aestivum (1)
Glycine max (1)
Mus musculus (1)

Repository

ENA (84)
geo (49)
biostudies-arrayexpress (40)
pride (32)
iProX (6)
PanoramaPublic (3)
jPOST (2)
PAXDB (2)
MassIVE (1)
MetaboLights (1)

Tissue

Plant cell (15)
Leaf (10)
Whole body (4)
Cell suspension culture (3)
Photosynthetic cell (2)
Seed (1)
Root (1)
Rosette (1)
Cell culture (1)

Technology Type

Mass Spectrometry (32)
Shotgun proteomics (17)
Bottom-up proteomics (11)
Data-dependent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry (1)
Affinity proteomics (1)
HDMSE (1)
SWATH MS (1)
Data-independent acquisition (1)
SRM/MRM (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2000 (4)
DNBSEQ-G400 (2)
BGISEQ-500 (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2014 (14)
2024 (13)
2021 (13)
2023 (11)
2022 (11)
2025 (11)
2026 (9)
2018 (8)
2019 (7)
2017 (5)
2013 (5)
2011 (5)
2010 (5)
2020 (5)
2015 (4)
2012 (3)
2009 (2)
2016 (1)
2008 (1)

UNIPROT ID/AC

AGO1D_ORYSJ (1)
Q337T3_ORYSJ (1)
B7EA34_ORYSJ (1)
A0A0P0WU30_ORYSJ (1)
Q6K9T9_ORYSJ (1)
A0A0P0XK57_ORYSJ (1)
B9FMH1_ORYSJ (1)
Q657F3_ORYSJ (1)
Q0DTB8_ORYSJ (1)
A0A0P0WZQ8_ORYSJ (1)
AB51G_ORYSJ (1)
Q338P6_ORYSJ (1)
CK5P1_ORYSJ (1)
A0A0P0W5I6_ORYSJ (1)
LOX3_ORYSJ (1)
ACA5_ORYSJ (1)
A0A0P0X9Y2_ORYSJ (1)
Q7XVG5_ORYSJ (1)
GLU2A_ORYSJ (1)
A0A0P0Y6M0_ORYSJ (1)
Q0E423_ORYSJ (1)
Q2RAP8_ORYSJ (1)
Q69S88_ORYSJ (1)
Q5JK37_ORYSJ (1)
Q6YT57_ORYSJ (1)
Q6Z6H8_ORYSJ (1)
Q5JML8_ORYSJ (1)
Q6YYB9_ORYSJ (1)
BGL29_ORYSJ (1)
Q0DY58_ORYSJ (1)

CHEBI ID

CHEBI:17765 (1)
CHEBI:77131 (1)
CHEBI:27469 (1)
CHEBI:82838 (1)
CHEBI:48300 (1)
CHEBI:36632 (1)
CHEBI:8337 (1)
CHEBI:17123 (1)
CHEBI:18183 (1)
CHEBI:17151 (1)
CHEBI:17992 (1)
CHEBI:16199 (1)
CHEBI:37084 (1)
CHEBI:15728 (1)
CHEBI:4139 (1)
CHEBI:86348 (1)
CHEBI:14336 (1)
CHEBI:4167 (1)
CHEBI:30763 (1)
CHEBI:16857 (1)
CHEBI:17497 (1)
CHEBI:30746 (1)
CHEBI:28842 (1)
CHEBI:17115 (1)
CHEBI:18287 (1)
CHEBI:26984 (1)
CHEBI:16977 (1)
CHEBI:33508 (1)
CHEBI:30796 (1)
CHEBI:17053 (1)

Metabolite Name

Unknown 21, RT(min) = 22.9 (1)
Unknown 20, RT(min) = 19.2 (1)
Unknown 19, RT(min) = 18.7 (1)
Unknown 18, RT(min) = 18.2 (1)
Unknown 17, RT(min) = 17.9 (1)
Unknown 16, RT(min) = 17.8 (1)
Unknown 15, RT(min) = 17.7 (1)
Unknown 14, RT(min) = 17.4 (1)
Unknown 13, RT(min) = 16.8 (1)
Unknown 12, RT(min) = 16.3 (1)
Unknown 11, RT(min) = 16.0 (1)
Unknown 10, RT(min) = 15.8 (1)
Unknown 9, RT(min) = 15.4 (1)
Unknown 8, RT(min) = 15.2 (1)
Unknown 7, RT(min) = 14.3 (1)
Unknown 6, RT(min) = 13.9 (1)
Unknown 5, RT(min) = 13.8 (1)
Unknown 4, RT(min) = 13.0 (1)
Unknown 3, RT(min) = 12.9 (1)
Unknown 2, RT(min) = 11.5 (1)
Unknown 1, RT (min) = 9.4 (1)
Lilioside B (1)
EINECS 208-487-3 (1)
2-ketogluconic acid (1)
3-Glycerophosphate (1)
L-fucose (1)
Xylitol (1)
D-Lyxopyranose (1)
Triethanolamine (1)
D-malic acid (1)

First Public Date

2024 (14)
2025 (13)
2026 (11)
2022 (11)
2021 (8)
2014 (6)
2023 (5)
2019 (5)
2020 (4)
2018 (3)
2017 (3)
2015 (1)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (15)
ChIP-seq (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (64)
2025 (58)
2022 (51)
2023 (48)
2024 (45)
2020 (37)
2019 (30)
2014 (27)
2017 (24)
2018 (21)
2015 (17)
2011 (16)
2016 (15)
2013 (15)
2010 (11)
2026 (10)
2012 (10)
2009 (4)
2008 (2)
2007 (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (5)
The Sainsbury Laboratory (3)
Westlake University (2)
Norwegian University of Science and Technology (NTNU), Department of Biology, Functional Plant Biology Group, Norway (1)
Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. (1)
Forschungszentrum Jülich ZEA-3 Analytik (1)
University Tübingen, Center for Plant Molecular Biology, Department of Plant Biochemistry, Germany (1)
College of Plant Protection, China Agricultural University, Beijing 100193, China (1)
Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Changchun, 130102, China (1)
King Abdullah University of Science and Technology, Thuwal, Saudi Arabia (1)
Leibniz Institute of Plant Biochemistry Research Group Proteome Biology of Plant Interactions (1)
Department of Plant Physiology and Biochemistry, University of Hohenheim, 70599 Stuttgart, Germany (1)
Departement de Chimie, Biochimie et Physisque, Université du Québec à Trois-Rivières (1)
Department of Plant Bioscience, Pusan National University, Miryang 50463, South Korea (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Bavarian Center for Biomolecular Mass Spectrometry, Freising, TU Munich (1)
Max Planck Institute for Plant Breeding Research Plant Proteomics Group Carl von Linné Weg 10 50829 Cologne Germany (1)
Group leader Dept Crop Genetics John Innes Centre Norwich UK (1)
Eberhard-Karls-Universität Tübingen, Center of Plant Molecular Biology, Department of Plant Biochemistry, Auf der Morgenstelle 32, D-72076 Tübingen, Germany (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (1)
Academia Sinica (1)
Proteome Analytics Leibniz Institute of Plant Biochemistry (1)
Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA (1)
Group leader Dept Crop Genetics John Innes Centre Norwich UK (1)
Institute of Plant and Microbial Biology, Zürich-Basel Plant Science Center, University of Zürich, Zürich, Switzerland (1)

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Arabidopsis leaf apoplast proteomes under flg22 induced pattern-triggered immunity

The apoplast is a critical interface in plant-pathogen interactions particularly in the context of pattern-triggered immunity (PTI), which is initiated by recognition of microbe-associated molecular patterns (PAMPs). Our study characterizes the proteomic profile of the Arabidopsis apoplast during PT...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2025-02-11 | PXD060654 | Pride

Regulatory Mechanisms between Pattern- and Effector-Triggered Immunity in Tomato Leaves Revealed by Integrative Proteomic and Phosphoproteomic Analyses

Plants have evolved a two-layered immune system that mainly includes pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) against pathogen attack. PTI and ETI signaling are functionally linked, but also distinct due to specific perceived ligands and activation modes. Unraveling how...

ORGANISM(S): Solanum lycopersicum

2021-11-25 | PXD028240 | Pride

Eti Pti Tomato Plant immunity Proteomics Pst Phosphorylation

tRNA-seq of Arabidopsis leaves during pattern-triggered immunity

PRJNA719400 | ENA

Expression analysis of Arabidopsis transgenic plants carrying DEX-inducible MKK4DD in Col or sid2 background treated with DEX or control

Effector-Triggered Immunity (ETI) and Pattern-Triggered Immunity (PTI) are well-defined modes of plant immunity triggered by recognition of pathogen effector proteins and microbe-associated molecular patterns, respectively. While ETI and PTI network extensively share signaling components, the shared...

ORGANISM(S): Arabidopsis thaliana

2014-07-29 | E-GEOD-40547 | biostudies-arrayexpress

Expression analysis of Arabidopsis plants infected with Pseudomonas syringae pv. tomato DC3000 (Pto) strains

ORGANISM(S): Arabidopsis thaliana

2014-07-29 | E-GEOD-40544 | biostudies-arrayexpress

The EDS1-PAD4-ADR1 node mediates Arabidopsis pattern-triggered immunity

Plants deploy cell surface and intracellular leucine rich-repeat domain (LRR) immune receptors to detect pathogens. LRR receptor kinases (LRR-RKs) and LRR receptor proteins (LRR-RPs) recognise microbe-derived molecules to elicit pattern-triggered immunity (PTI), whereas nucleotide-binding LRR (NLR) ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2021-07-05 | PXD026120 | Pride

Lrr receptor kinases Pad4 Arabidopsis immunity Lrr receptor proteins Eds1

Multi-omics analysis reveals regulatory networks of pattern-triggered immunity in rice

we performed multi-omics analysis to determine how rice PTI response to chitin and flg22. we integrated metablomics, transcriptomics, proteomics.

ORGANISM(S): Oryza Sativa

2021-04-21 | PXD025565 |

Repression of pattern-triggered immunity by the hypoxia response program

Seedlings of Arabidopsis wild type and ATE1/2 double knock-out mutants were treated with flagellin 22 peptide to elicit pathogen-triggered immunity (PTI) responses. Leaves were harvested and proteome composition assessed.

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-07-25 | PXD046263 | Pride

Hypoxia Arabidopsis thaliana N-degron pathway Pti Plant immunity

A functional link between Enhanced Disease Susceptibility 1 and GH3.12/avrPphB susceptible 3 in pattern-triggered immunity in plants

PRJNA669989 | ENA

A plant effector-triggered immunity signaling sector is inhibited by pattern-triggered immunity.

Not available

S-EPMC5599791 | biostudies-literature

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