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MetabolomicsNano-silicon dioxide declined organic pollutant contents in plant samples

Composite organic pollutant residues caused considerable threats to soil systems, and the nano-SiO2 could decrease organic pollutant residuecontents in plant systems

2025-11-24 | MTBLS12683 | MetaboLights
TranscriptomicsPlant root transcriptome profiling of Azospirillum-rice cooperation
Cooperation involving Plant Growth-Promoting Rhizobacteria results in improvements of plant growth and health. While pathogenic and symbiotic interactions are known to induce transcriptional changes for genes related to plant defense and development, little is known about the impact of phytostimulat...
ORGANISM(S): Oryza sativa Japonica Group 
2014-12-22 | E-GEOD-59137 | biostudies-arrayexpress
TranscriptomicsIn Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts
Scaffold or matrix attachment regions (S/MARs) are found in all eukaryotes. The pattern of distribution and genomic context of S/MARs is thought to be important for processes such as chromatin organization and modulation of gene expression. Despite the importance of such processes, much is unknown a...
ORGANISM(S): Arabidopsis thaliana 
2014-02-03 | E-GEOD-45549 | biostudies-arrayexpress
TranscriptomicsExpression and regulation of lincRNAs during T cell development and differentiation
Although lincRNAs are implicated in regulating gene expression in various tissues, little is known about lincRNA transcriptomes in the T cell lineages. Here we identify 1,524 lincRNAs in 42 T cell samples from early T cell progenitors to terminally differentiated T helper subsets. Our analysis revea...
ORGANISM(S): Mus musculus 
2013-09-23 | E-GEOD-48138 | biostudies-arrayexpress
TranscriptomicsCoordinated posttranscriptional mRNA population dynamics during T-cell activation
Although RNA-binding proteins (RBPs) coordinate many key decisions during cell growth and differentiation, the dynamics of RNA–RBP interactions have not been extensively studied on a global basis. We immunoprecipitated endogenous ribonucleoprotein complexes containing HuR and PABP throughout a T-cel...
ORGANISM(S): Homo sapiens 
2009-08-19 | E-GEOD-11989 | biostudies-arrayexpress
ProteomicsSeed comparative genomics in three coffee species evidence desiccation tolerance mechanisms among intermediate seeds
In contrast to the desiccation tolerant (DT) ‘orthodox’ seeds, the so-called ‘intermediate’ seeds cannot survive complete drying and are short-lived. All species of the genus Coffea produce intermediate seeds but show a considerable variability for the seed DT level, which may help to decipher the m...
ORGANISM(S): Coffea canephora Coffea arabica (Arabian coffee) Coffea eugenioides 
2020-05-26 | PXD015806 | Pride
Dehydration Transcriptome. Intermediate seeds Respiration Coffea Late maturation Desiccation tolerance Metabolic quiescence Seed development 
UnknownColicins and Salmocins - New Classes of Plant-Made Non-antibiotic Food Antibacterials.
Not available
S-EPMC6465592 | biostudies-literature
TranscriptomicsTranscription profiling of Arabidopsis dms4-1, drd1-1 and drd1-6 mutant seedlings against wild-type to identify targets of IWR1-like transcription factor
We identified in a forward genetic screen a novel factor required for RNA-directed DNA methylation (IWR1-like transcription factor). The aim of the study was to identify natural targets of this factor and to compare it to targets of drd1 another major key factor required for the RNA silencing proces...
ORGANISM(S): Arabidopsis thaliana 
2010-01-10 | E-MEXP-2251 | biostudies-arrayexpress
MetabolomicsDefective cytokinin signaling reprograms lipid and flavonoid gene-to-metabolite networks to mitigate high salinity in Arabidopsis

Cytokinin (CK) in plants regulates both developmental processes and adaptation to environmental stress. Arabidopsis histidine phosphotransfer ahp2,3,5 and type-B response regulator arr1,10,12 triple mutants are almost completely defective in CK signaling, and the ahp2,3,5

2021-11-25 | MTBLS2532 | MetaboLights
TranscriptomicsGenome-wide analysis of expression and DNA methylation at CpG-island-associated sense-antisense transcript loci in mouse
Sense-antisense transcript (SAT) pairs are pairs of transcripts that fully or partially overlap but are transcribed in opposite directions. Although SAT expression occurs in various species, most SAT pairs have not been examined in detail. Because our previous studies revealed some tissue specificit...
ORGANISM(S): Mus musculus 
2010-08-26 | E-GEOD-14392 | biostudies-arrayexpress
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