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ProteomicsProfiling of glioma C6 and astrocytes rat cell lines before and after co-cultivation.
We have grown C6 glioma cells and rat astrocytes, as well as astrocyte cells co-cultured together with C6 glioma. We performed proteome-wide LC-MS analysis of this experimental groups. The data including LC-MS/MS raw files and exported MaxQuant report. For our co-cultivated in vitro model we used as...
ORGANISM(S): Rattus norvegicus (Rat) 
2021-10-05 | PXD026776 | Pride
Glioma c6 Co-culture Proteome Lc-ms/ms 
UnknownData on nucleoid-associated proteins isolated from Mycoplasma Gallisepticum in different growth phases.
Not available
S-EPMC7327420 | biostudies-literature
ProteomicsComprehensive functional analysis of Escherichia coli ribosomal RNA methyltransferases
We analyzed total proteome of three methyltransferase gene knockouts strains of Escherichia coli: ΔrsmF (JW5301), ΔrlmC (JW2756), ΔrlmE (JW3146) from Keio collection and wild type (WT). Proteins were assessed using IDA approach (i.e. Information Dependent Acquisition) and SWATH (Data-Independent Acq...
ORGANISM(S): Escherichia coli 
2020-01-21 | PXD017171 | Pride
Lc-msms Escherichia coli Ida 
ProteomicsData on proteome of Mycoplasma hominis cultivated with arginine or thymidine as a carbon source
M. hominis cells were grown in liquid medium supplied with arginine or thymidine as a carbon source. LC-MS analysis was performed on Ultimate 3000 Nano LC System (Thermo Fisher Scientific) coupled with Q Exactive HF benchtop Orbitrap mass spectrometer (Thermo Fisher Scientific) via a nanoelectrospra...
ORGANISM(S): Mycoplasma hominis ATCC 23114 
2020-05-06 | PXD018714 | Pride
Growth conditions Hominis Proteome Mycoplasma 
ProteomicsProteomic profile of nucleoid-associated proteins isolated from Mycoplasma gallisepticum in different growth phases
Mycoplasma gallisepticum (MG) is one of the smallest free-living and self-replicating organisms, it is characterized by lack of cell wall and reduced genome size. As a result of genome reduction, MG has a limited variety of DNA-binding proteins (DBP) and transcription factors. To investigate the dyn...
ORGANISM(S): Mycoplasma gallisepticum S6 
2020-05-12 | PXD019077 | Pride
Mycoplasma gallisepticum Synchronous growth Dia Nucleoid Nucleoid associated proteins 
ProteomicsProfiling of Escherichia coli isolated from Crohn’s disease patients after adhesion and invasion in CaCo cell line.
Three AIEC strains were isolated from CD patients. We analyzed three types of cell: before adhesion and adhesion-invasion(control), after adhesion-invasion and after invasion. Proteins were assessed in an untargeted label-free bottom-up proteomic experiment using IDA approach (i.e. Information Depen...
ORGANISM(S): Escherichia coli 
2019-11-14 | PXD014250 | Pride
Lc-msms Crohn’s disease Escherichia coli Aiec Proteome 
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