Post-translational modifications (ptm)

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ENSEMBL ID

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CHEBI ID

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Lab affiliation

University of Washington (9)
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1. Department of Biochemistry and Molecular Cell Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine. (2)
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European Institute of Oncology (2)
Genome Biology Unit and Proteomics Core Facility, European Molecular Biology Laboratory, 69117 Heidelberg, Germany (2)
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Non Kinetic (1)

Classification

protozoa (1)

Modification

N6 (15)
N6-dimethyl-L-lysine (9)
2x(15)N labeled L-lysine (3)
4x(15)N labeled L-arginine (3)
4x(2)H labeled dimethylated L-lysine (2)
4 (1)
4'-dihydroxyphenylalanine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

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GRO-seq (1)
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Release Date

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Data for: A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls

Histone proteomics from 5 human cell lines, discussed in publication: "A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls". Further explanation of data types, methods, and analysis are available in Data Explanation document in...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000084298 | MassIVE

Posttranslational modification analysis of Histone H3t

Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice.

ORGANISM(S): Mus Musculus (mouse)

2024-09-13 | PXD052428 | JPOST Repository

Peptide collision cross section of 22 post-translational modifications

The present study investigates the ion mobility characteristics of synthetic peptides carrying 22 different post-translational modifications by Ion Mobility-Mass Spectrometry. Samples were kindly provided by the ProteomeTools project.

ORGANISM(S): Homo sapiens (Human)

2023-08-25 | PXD042416 | Pride

The NAE1-mediated Neddylation operates as an essential post-translational modification checkpoint for effector CD8+ T cells

Cells were lysed with TFA, and precipitated with cold acetone. The precipitates were transferred to E3filters and digestion was performed overnight with trypsin. The peptides were desalted with StageTips, and were analyzed on Eclipse Orbitrap with DIA mode. For MS1, the resolution was set to 120,00...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-02-27 | MSV000094179 | MassIVE

Smith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications (with acetylation pathway)

Graham R. Smith & Daryl P. Shanley. Modelling the response of FOXO transcription factors to multiple post-translational modifications made by ageing-related signalling pathways. PLoS ONE 5, 6 (2010). FOXO transcription factors are an important, conserved family of regulators of cellular processes i...

2024-09-02 | BIOMD0000000706 | BioModels

Pathology tissue-quantitative mass spectrometry analysis to profile histone post-translational modification patterns in patient samples

Histone post-translational modifications (hPTMs) generate a complex combinatorial code that has been implicated with various pathologies, including cancer. Dissecting such a code in physiological and diseased states may be exploited for epigenetic biomarker discovery, but hPTM analysis in clinical s...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090)

2016-08-25 | MSV000080100 | MassIVE

Systematic characterization of 21 post-translational modification using synthetic peptides

The data presented in this study in the - context of the ProteoemTools project - is based on the synthesis of about 5000 synthetic peptides carrying 21 different post-translational modifications to systematically characterize their chromatographic and mass spectrometric properties using multimodal L...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-04-05 | MSV000091649 | MassIVE

Smith2010 - Response of FOXO Transcription Factors to Post-Translational Modifications Made by Ageing-Related Signalling Pathways

2024-09-02 | BIOMD0000000705 | BioModels

Systems level analysis of histone H3 post-translational modifications reveals features of PTM crosstalk in chromatin regulation

Chromatin structure and function is maintained by dynamic protein-protein and protein-nucleic acid interactions. Histones are a family of proteins that are abundant chromatin constituents and that carry numerous post-translational modifications (PTMs). Histone PTMs mediate a variety of biological ac...

ORGANISM(S): Mus musculus (Mouse)

2016-06-16 | PXD002560 | Pride

Post-translational modification crosstalk histone mass spectrometry proteomics

Post-Translational Modifications of recombinant Hsp70s expressed in different systems can alter their functional properties

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) Mycobacterium tuberculosis GM 1503

2020-03-13 | PXD011583 | Pride

Hsp70 Qe Post-translational modifications Ptm proteomics

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