Proteomic architecture

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Unknown (378)
Proteomics (163)
Genomics (67)
Transcriptomics (34)
Other (7)
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Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (120)
Andropogon gerardi (120)
Bacteria (120)
Bartonella quintana JK 31 (120)
Canis lupus familiaris (120)
Cnidaria (120)
Ectopseudomonas oleovorans CECT 5344 (120)
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Human immunodeficiency virus 1 (120)
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Methylohalobius crimeensis 10Ki (120)
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Repository

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Disease

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Parkinson's disease (1)
Parkinson's disease 1 (1)
Primary autosomal recessive microcephaly (1)
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Seckel syndrome (1)
Trypanosomiasis (1)
Vascular dementia (1)

Technology Type

Mass Spectrometry (120)
Shotgun proteomics (68)
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SWATH MS (8)
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HDMSE (1)
MSE (1)
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Instrument Platform

Q Exactive (5)
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Publication Date

2025 (37)
2026 (34)
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2021 (20)
2018 (14)
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2020 (11)
2019 (9)
2012 (8)
2017 (8)
2015 (4)
2016 (2)
2014 (2)
2013 (2)
2006 (2)

UNIPROT ID/AC

2A5D_YEAST (2)
2AAA_YEAST (2)
2ABA_YEAST (2)
4932.YBR084C-A (2)
4932.YDL184C (2)
4932.YDL191W (2)
4932.YEL054C (2)
4932.YER102W (2)
4932.YIL069C (2)
4932.YJR145C (2)
4932.YKR059W (2)
4932.YKR094C (2)
4932.YML026C (2)
4932.YMR143W (2)
4932.YNL030W (2)
4932.YNL162W (2)
4932.YOR133W (2)
4932.YOR182C (2)
4932.YOR312C (2)
4932.YPL090C (2)
4932.YPL220W (2)
4932.YPR043W (2)
4932.YPR080W (2)
4932.YPR132W (2)
6PGD1_YEAST (2)
AAKG_YEAST (2)
AAP1_YEAST (2)
AAP_YEAST (2)
AATM_YEAST (2)
AB140_YEAST (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000170477 (2)
ENSG00000176092 (1)
ENSG00000229353 (1)
ENSG00000247315 (1)

Metabolite Name

PS(22:2(13Z,16Z)/22:2(13Z,16Z)) (2)
PS(20:3(8Z,11Z,14Z)/22:4(7Z,10Z,13Z,16Z)) (2)
TG(16:0/16:0/18:1(9Z)) (2)
DG(16:0/16:0/0:0) (2)
Tuberculostearic acid (2)
Octadecyl fumarate (2)
PA(14:0/22:2(13Z,16Z)) (2)
MG(16:0/0:0/0:0) (2)
Dioctyl hexanedioate (2)
C00049 (1)
1-Fluoro-25-hydroxy-16-ene-23-yne-26,27-hexadeuterovitamin-D3 (1)
24,24-difluoro-1alpha,25-dihydroxy-24a-homocholecalciferol (1)
1alpha-hydroxy-22-oxacholecalciferol (1)
AC2SGL(18:0/36:0(2Me[S],4Me[S],6Me[S],8Me[S],10Me[S],12Me[R],14Me[R],16Me[R],18Me[R],19OH)) (1)
C25:3 Highly branched isoprenoid A (1)
Hoslundin (1)
Sophoracoumestan A (1)
PIM2(19:0/16:0) (1)
PA(P-16:0/20:5(5Z,8Z,11Z,14Z,17Z)) (1)
PI(22:2(13Z,16Z)/22:1(11Z)) (1)
PI(20:3(8Z,11Z,14Z)/22:2(13Z,16Z)) (1)
PI(17:1(9Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (1)
PG(15:0/22:4(7Z,10Z,13Z,16Z)) (1)
PE-Cer(d16:2(4E,6E)/20:1(11Z)(2OH)) (1)
Isoglobotriglycosylceramide(d18:1/26:0) (1)
PS(P-16:0/19:1(9Z)) (1)
PI(20:2(11Z,14Z)/22:1(11Z)) (1)
PA(P-18:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (1)
CL(1'-[16:0/16:0],3'-[16:0/16:0]) (1)
CL(1'-[16:0/16:0],3'-[18:1(9Z)/16:0]) (1)

First Public Date

2026 (19)
2025 (16)
2024 (9)
2023 (3)
2021 (3)
2022 (2)
2016 (2)
2020 (1)
2014 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (7)
ChIP-seq (2)
Cell line - High-throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2025 (57)
2024 (35)
2023 (34)
2021 (30)
2020 (27)
2022 (27)
2019 (26)
2018 (22)
2017 (21)
2015 (17)
2016 (16)
2011 (12)
2012 (10)
2014 (9)
2013 (9)
2009 (8)
2026 (7)
2010 (7)
2005 (4)
2008 (3)
2006 (3)
2007 (2)
2004 (2)
2003 (1)

Lab affiliation

Cellzome (6)
South China Agricultural University (2)
Aix-Marseille Univ, CNRS,FR3479, Proteomics facility of Institut de Microbiologie de la Mediterranee, Marseille Proteomique, Marseille, France (1)
Applied Science and Technology Department–BioSolar Lab, Politecnico di Torino,Italy (1)
Ben-Gurion University (1)
Biological Sciences University of Southampton (1)
Biomedical Research Institute, Foundation for Research and Technology-Hellas, Ioannina, Greece. (1)
Biotech Research and Innovation Centre (BRIC) University of Copenhagen, Copenhagen, Denmark (1)
CRCM (Marseille Protéomique), Inserm U1068, Institut Paoli-Calmettes, Aix-Marseille Université, UM105, CNRS UMR7258, Marseille (1)
CSIR-Centre for Cellular and Molecular Biology Hyderabad India (1)
Center for Integrative Genomics, CIG, UNIL Sorge, CH1015 Lausanne, Switzerland (1)
Center for Translational Medicine, Lewis Katz School of Medicine at Temple University, 3500 N Broad St, MERB 949, Philadelphia, PA, 19140, USA. (1)
Center of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand (1)
Centre for Cancer Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London. EC1M6BQ, London, UK (1)
Chinese Academy of Sciences (1)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam (1)
Columbia University Irving Medical Center (1)
DR.G.VENKATASAMY RESEARCH INSTITUTE, Aravind medical research foundation, MADURAI (1)
Departement of Veterinary Medicine and Animal Sciences (1)
Department of Anatomy and Cell Biology, University of Iowa (1)
Department of Anatomy and Developmental BiologyMonash University, Clayton, Victoria, Australia; Development and Stem Cells Program, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia. Alexander N Combes alex.combes@monash.edu. David J Nikolic-Paterson david.nikolic-paterson@monash.edu. (1)
Department of Biochemistry University of Cambridge Cambridge UK (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 14061, United States (1)
Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA; Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA (1)
Department of Biology, Technical University of Darmstadt, Darmstadt, Germany (1)
Department of Biomedical Sciences, Panum Institute, University of Copenhagen, Blegdamsvej 3, 2200 Copenhagen N, Denmark. (1)
Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA. Department of Cell Biology, Harvard Medical School, Boston, MA, USA. (1)
Department of Clinical Genetics, Erasmus University Medical Center, 3015 GE Rotterdam, Netherlands Department of Pediatrics, Erasmus University Medical Center, 3015 GE Rotterdam, Netherlands Center for Lysosomal and Metabolic Diseases, Erasmus University Medical Center, 3015 GE Rotterdam, Netherlands (1)

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COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS

This SuperSeries is composed of the following subset Series: GSE23672: COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS (AGILENT ARRAYS) GSE33948: COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS (AFFYMETRIX ARRAYS...

ORGANISM(S): Mus musculus

2012-08-12 | E-GEOD-33949 | biostudies-arrayexpress

Proteomic architecture of frailty across the spectrum of cardiovascular disease.

Not available

S-EPMC10652351 | biostudies-literature

Proteomic Architecture of Human Coronary and Aortic Atherosclerosis.

Not available

S-EPMC6011234 | biostudies-literature

Proteomic profiling of neuronal mitochondria reveals modulators of synaptic architecture.

Not available

S-EPMC5659037 | biostudies-literature

Insights Into Ubiquitin Chain Architecture Using Ub-Clipping

Here we release our proteomic datasets on ubiquitin chain architecture using a new approach termed Ub-clipping.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-04-03 | MSV000083662 | MassIVE

Single-cell transcriptomic and proteomic analysis of Parkinson’s disease brains

PRJNA835055 | ENA

Proteomic Profiling Reveals the Architecture of Granulomatous Lesions Caused by Tuberculosis and Mycobacterium avium Complex Lung Disease.

Not available

S-EPMC6978656 | biostudies-literature

Integrative genomic and proteomic studies of Leishmania donovani strains revealed genetic features associated with drug resistance

Leishmaniasis is a neglected tropical disease affecting millions of people worldwide. Emerging drug resistance of Leishmania species poses threaten to the effective control and elimination of this neglected tropical disease. Here we conducted whole genome resequencing, proteome profiling, and compar...

ORGANISM(S): Leishmania <subgenus>

2021-09-09 | PXD017089 | Pride

Molecular architecture of individual synaptic vesicles

Synaptic vesicles (SVs) perform neurotransmitter uptake inside the presynaptic neuron and their delivery to the synaptic cleft. The molecular composition of SVs was investigated, largely by proteomic analysis and fluorescent microscopy, and a model of an average SV was proposed. However, structural ...

ORGANISM(S): Mus musculus (Mouse)

2025-03-17 | PXD045356 | Pride

Synaptic vesicles Sv Fusion Proteinasek Lumos Pk

EVALUATION OF THE EFFECTS OF HUMIC ACIDS ON MAIZE ROOT ARCHITECTURE BY LABEL-FREE PROTEOMICS ANALYSIS

Humic substances have been widely used as plant growth promoters to improve the yield of agricultural crops. Root soluble protein profiles of 11 days after planting, cultivated with and without humic acids (50 mg C/L), were analysed using the label-free quantitative proteomic approach. The effects o...

ORGANISM(S): Zea mays (Maize)

2019-11-12 | PXD014407 | Pride

Humic acids Sustainable agriculture technology Maize Label-free proteome

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653 Results

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