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ProteomicsDevelopment of in planta chemical cross-linking-based quantitative interactomics in Arabidopsis
An in planta chemical cross-linking-based quantitative interactomics (IPQCX-MS) workflow has been developed to investigate in vivo protein-protein interactions and alteration in protein structures in a model organism, Arabidopsis thaliana. A chemical cross-linker, azide-tag-modified disuccinimidyl p...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2018-08-14 | PXD008161 | Pride
Arabidopsis thaliana Ecl2 In planta quantitative interactomics Ipqcx-ms In vivo cross-linking 4c proteomic workflow 
UnknownIntra-organ cell specific mitochondrial quantitative interactomics.
Not available
S-EPMC11195139 | biostudies-literature
UnknownQuantitative Interactomics in Primary T Cells Provides a Rationale for Concomitant PD-1 and BTLA Coinhibitor Blockade in Cancer Immunotherapy.
Not available
S-EPMC6581740 | biostudies-literature
UnknownCombining Quantitative Proteomics and Interactomics for a Deeper Insight into Molecular Differences between Human Cell Lines.
Not available
S-EPMC11867029 | biostudies-literature
UnknownCombining quantitative proteomics and interactomics for a deeper insight into molecular differences between human cell lines.
Not available
S-EPMC11195184 | biostudies-literature
UnknownQuantitative interactomics in primary T cells unveils TCR signal diversification extent and dynamics.
Not available
S-EPMC6859066 | biostudies-literature
ProteomicsFunctional analysis of O-GlcNAcylation by networking of OGT interactors and substrates
The post-translational modification (PTM) of proteins by O-linked β-N-acetyl-D-glucosamine (O-GlcNAcylation) is widely found across the proteome and regulates diverse cellular processes, from transcription and translation to signal transduction and metabolism. However, most functional studies to dat...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2026-04-03 | PXD035902 | Pride
ProteomicsA universal peptide matrix interactomics approach to disclose motif dependent protein binding
Protein-protein interactions (PPIs) mediated by intrinsically disordered regions (IDRs) are often based on short linear motifs (SLiM). SLiMs are implicated in signal transduction and gene regulation, yet remain technically laborious and notoriously challenging to study. Here, we present an optimized...
ORGANISM(S): Homo sapiens (Human) 
2021-08-11 | PXD027265 | Pride
Prisma Ptm Peptide interactomics 
ProteomicsIntegrative structural Interactomics reveals protein organization and structure in a giant virus
Giant viruses are large DNA viruses that infect unicellular and multicellular eukaryotes and form exceptionally large extracellular particles. (Meta)genomics and (meta)transcriptomics have provided insight into their diverse coding repertoire, but many of the proteins remain to be characterized as t...
ORGANISM(S): Melbournevirus Acanthamoeba castellanii str. Neff 
2026-05-20 | PXD064933 | Pride
Cross-linking mass spectrometry Bottom-up proteomics Giant virus 
ProteomicsQuantitative Proteomics to identify nuclear RNA-binding proteins of Malat1
The long non-coding RNA Malat1 has been implicated in several human cancers, while the mechanism of action is not completely understood. As RNAs in cells function in the context of RBPs identification of their RNA-binding proteins can shed light on their functionality. We here performed quantitative...
ORGANISM(S): Mus musculus (Mouse) 
2020-01-29 | PXD017309 | Pride
Malat1  lncrna  rbps  interactome 
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