Quantitative proteomics.

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Proteomics (13321)
Unknown (7333)
Genomics (485)
Transcriptomics (381)
Other (113)
Metabolomics (83)
Models (73)
Multiomics (26)
Genomic (2)
Methylation profiling (2)

Organisms

Homo sapiens (1687)
Mus musculus (461)
Rattus norvegicus (66)
Escherichia coli (48)
Saccharomyces cerevisiae (38)
Arabidopsis thaliana (37)
Staphylococcus aureus (37)
Drosophila melanogaster (12)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Solanum tuberosum (6)
Danio rerio (4)
Chlamydomonas reinhardtii (4)
synthetic construct (4)
Klebsiella pneumoniae (3)
Streptococcus pneumoniae (2)
Oncorhynchus mykiss (2)
Methanococcus maripaludis (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Rhodopseudomonas palustris (2)
Shewanella oneidensis MR-1 (2)
Eukaryota (1)
Mammalia (1)
Agaricus bisporus (1)
Agrobacterium tumefaciens (1)
Bacteroides cellulosilyticus (1)
Dorea longicatena DSM 13814 (1)
Colinus virginianus (1)
Thermoplasma acidophilum DSM 1728 (1)
Bacteria (1)
Saccharomyces paradoxus (1)

Organisms

Homo sapiens (163)
Mus musculus (80)
Staphylococcus aureus (7)
Escherichia coli (6)
Rattus norvegicus (6)
Caenorhabditis elegans (4)
Gallus gallus (4)
Schizosaccharomyces pombe (3)
Saccharomyces cerevisiae (3)
Chlamydomonas reinhardtii (2)
Drosophila melanogaster (2)
Plasmodium falciparum (2)
Crotalinae (1)
Microglena sp. YARC (1)
Chinese wheat mosaic virus (1)
Ruminiclostridium cellobioparum subsp. termitidis CT1112 (1)
Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 (1)
Streptococcus pneumoniae D39 (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Dickeya solani (1)
Human adenovirus 7 (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Methanococcus maripaludis (1)
Cricetulus griseus (1)
Locusta migratoria (1)
Trypanosoma brucei (1)
Xenopus laevis (1)
Rhodopseudomonas palustris (1)
Shewanella oneidensis MR-1 (1)
Mycobacterium tuberculosis H37Rv (1)

Repository

pride (9610)
iProX (1312)
MassIVE (1020)
jPOST (777)
ENA (393)
geo (285)
PeptideAtlas (269)
biostudies-arrayexpress (255)
PAXDB (154)
PanoramaPublic (115)
GPMDB (86)
MetaboLights (78)
BioModels (73)
EGA (12)
ExpressionAtlas (5)
GNPS (5)
NODE (5)
LINCS (4)
dbGaP (2)

Tissue

Cell culture (1995)
Brain (602)
Epithelial cell (587)
Liver (359)
Permanent cell line cell (323)
Blood plasma (277)
Plant cell (275)
Leaf (263)
Lung (221)
Heart (218)
Blood (207)
Kidney (188)
Whole body (183)
Fibroblast (175)
T cell (173)
Blood serum (168)
Others (134)
Spleen (86)
Plasma Non-glyco (13)
Brain (3)
Right cardiac atrium (2)
Pancreas (2)
Biliary system (1)
Diaphragm (1)
Sinoatrial node (1)
Heart left ventricle (1)
Left cardiac atrium (1)
Female Reproductive System (1)
Ovary (1)
Urine (1)

Disease

Breast cancer (219)
Disease free (213)
Colon cancer (144)
Acute leukemia (100)
Not Available (86)
Alzheimer's disease (83)
Cervix carcinoma (76)
Cardiovascular system disease (73)
Malignant neoplasm of ovary (54)
Lung cancer (47)
Type 2 diabetes mellitus (45)
Wounds and Injuries (45)
Prostate adenocarcinoma (44)
Brain cancer (41)
COVID-19 (36)
Parkinson's disease (35)
Melanoma (33)
Non-small cell lung carcinoma (32)
Lymphoma (31)
Pancreatic ductal adenocarcinoma (31)
Glioblastoma (26)
Plasmodium falciparum malaria (24)
Neuroblastoma (23)
Brain glioblastoma multiforme (22)
Hepatocellular carcinoma (21)
Normal (2)
Cancer (1)
Locally advanced rectal cancer (1)
Cervical cancer (1)
High Grade Ovarian Serous Adenocarcinoma (1)

Technology Type

Mass Spectrometry (9610)
Shotgun proteomics (5930)
Bottom-up proteomics (1507)
Data-dependent acquisition (843)
Affinity purification coupled with mass spectrometry proteomics (809)
SWATH MS (551)
Data-independent acquisition (457)
Gel-based experiment (442)
Top-down proteomics (257)
SRM/MRM (178)
Chemical cross-linking coupled with mass spectrometry proteomics (111)
HDMSE (86)
Mass spectrometry (64)
All-ion fragmentation (62)
MSE (59)
DiaPASEF (41)
Mass spectrometry imaging (28)
Affinity proteomics (22)
Proteogenomics (22)
Mass spectrometry assay (10)
NMR spectroscopy (5)
Metaproteomics (5)
Glycoproteomics (4)
Immunopeptidomics (4)
Fluorescence intensity (3)
Microwestern (3)
Illumina HumanMethylation450K, Illumina HiSeq 2500, Illumina InfiniumCoreExome-24v1-1_A, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
Mass spectrometry (1)
NMR spectroscopy assay (1)

Instrument Platform

Q Exactive (246)
Orbitrap Fusion Lumos (126)
LTQ Orbitrap Velos (123)
Orbitrap Fusion (107)
Instrument (86)
LTQ Orbitrap (71)
LTQ Orbitrap Elite (65)
Q Exactive Plus (49)
Orbitrap Eclipse (48)
Orbitrap Exploris 480 (47)
Q Exactive HF (46)
TripleTOF 5600 (40)
Q Exactive HF-X (37)
Illumina HiSeq 2500 (6)
Illumina HiSeq 2000 (6)
NextSeq 500 (4)
Illumina Genome Analyzer IIx (3)
Illumina NovaSeq 6000 (3)
Illumina Genome Analyzer II (2)
Illumina HiSeq 4000 (2)
TruSeq stranded Total RNA kit (1)
Linux (1)
Affymetrix Gene Atlas System (1)
Affymetrix GeneChip(R) HT Scanner (1)
Affymetrix GeneChip Scanner 3000 7G (1)
AB SOLiD 4 System (1)
RNeasy Mini Kit (QIAGEN) (1)
NextSeq 2000 (1)
Illumina HiSeq 3000 (1)
QE-MS (1)

Publication Date

2024 (1669)
2022 (1533)
2025 (1486)
2023 (1369)
2021 (1247)
2020 (1064)
2019 (889)
2026 (887)
2018 (805)
2017 (575)
2016 (569)
2015 (440)
2014 (293)
2013 (215)
2011 (71)
2012 (59)
2010 (57)
2008 (28)
2009 (22)
2006 (15)
2007 (10)
2005 (5)
2004 (4)
2003 (1)
2002 (1)
2001 (1)

UNIPROT ID/AC

TPIS_HUMAN (61)
ABCE1_HUMAN (60)
ACOC_HUMAN (60)
AIMP1_HUMAN (60)
ARPC3_HUMAN (60)
ARPC4_HUMAN (60)
BLMH_HUMAN (60)
C1TC_HUMAN (60)
CAP2_HUMAN (60)
CATA_HUMAN (60)
CH10_HUMAN (60)
CISY_HUMAN (60)
COF2_HUMAN (60)
COX5A_HUMAN (60)
DCTN1_HUMAN (60)
EFTU_HUMAN (60)
EIF3A_HUMAN (60)
EIF3B_HUMAN (60)
ENOPH_HUMAN (60)
ERF3A_HUMAN (60)
G3P_HUMAN (60)
G6PD_HUMAN (60)
G6PI_HUMAN (60)
GELS_HUMAN (60)
GRHPR_HUMAN (60)
GUAA_HUMAN (60)
HSPB1_HUMAN (60)
Q5EG47 (1)
P35569 (1)
P06213 (1)

ENSEMBL ID

ENSG00000170477 (116)
ENSECAG00000004960 (51)
ENSECAG00000009556 (51)
ENSECAG00000014414 (51)
ENSECAG00000021580 (51)
ENSECAG00000001810 (50)
ENSECAG00000004973 (50)
ENSECAG00000011847 (50)
ENSECAG00000019927 (50)
ENSECAG00000021499 (50)
ENSECAP00000007368 (50)
ENSECAP00000013223 (50)
ENSECAG00000006095 (49)
ENSECAG00000009752 (49)
ENSECAG00000014858 (49)
ENSECAP00000003495 (49)
ENSECAG00000000207 (48)
ENSECAG00000010481 (46)
ENSECAP00000007504 (45)
ENSECAG00000000548 (44)
ENSECAG00000012096 (44)
ENSECAG00000004201 (43)
ENSECAG00000024571 (43)
ENSECAG00000016475 (42)
ENSECAG00000019900 (42)
ENSECAG00000015581 (41)
ENSECAG00000000841 (40)
ENSECAG00000003345 (40)
ENSECAG00000014197 (40)
ENSECAG00000021116 (40)

CHEBI ID

CHEBI:17154 (76)
CHEBI:15940 (75)
CHEBI:16870 (70)
CHEBI:18036 (66)
CHEBI:15435 (66)
CHEBI:17458 (66)
CHEBI:15430 (66)
CHEBI:29009 (66)
CHEBI:42504 (66)
CHEBI:27485 (66)
CHEBI:27754 (66)
CHEBI:15630 (66)
CHEBI:27969 (66)
CHEBI:15763 (66)
CHEBI:15554 (66)
CHEBI:16600 (66)
CHEBI:16208 (66)
CHEBI:15553 (66)
CHEBI:15927 (66)
CHEBI:28031 (66)
CHEBI:45919 (66)
CHEBI:17151 (66)
CHEBI:16929 (66)
CHEBI:16171 (66)
CHEBI:16110 (66)
CHEBI:15551 (66)
CHEBI:28096 (66)
CHEBI:42394 (66)
CHEBI:15901 (66)
CHEBI:17636 (66)

Metabolite Name

Betaine (11)
Citric acid (11)
Methionine (10)
Choline (10)
Adenosine (10)
Spermidine (10)
Adenine (10)
Creatine (10)
Leucine (9)
Valine (9)
Fumaric acid (9)
Proline (9)
Phenylalanine (9)
Glycine (8)
Pyroglutamic acid (8)
Succinic acid (8)
Nicotinamide (8)
Isoleucine (8)
Glucose (8)
Azelaic acid (8)
Guanosine (8)
L-Tyrosine (8)
Hypoxanthine (8)
Uracil (7)
Ornithine (7)
Oleamide (7)
Uric acid (7)
Uridine (7)
Tryptophan (7)
Glycine (6)

First Public Date

2026 (66)
2025 (53)
2024 (43)
2023 (41)
2021 (32)
2014 (27)
2018 (22)
2022 (21)
2020 (20)
2019 (17)
2015 (15)
2013 (15)
2016 (13)
2017 (7)
2012 (1)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (3)

Lab affiliation

Institute of Molecular Biology (IMB) (28)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (24)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (23)
Mendel University in Brno (18)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (17)
EDyP (15)
Head of the Curie Institute Mass Spectrometry Platform (15)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (14)
ETH Zurich (14)
Harvard Medical School (14)
USDA-ARS (14)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (13)
Massachusetts Institute of Technology (13)
Proteomics (13)
University of Texas Medical Branch (13)
IMB, Ackermannweg 4, 55128 Mainz (12)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (12)
University of Washington (12)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (11)
Head of Proteomics (11)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (11)
Cornell University (10)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Huazhong Agricultural University (10)
University of Edinburgh (10)
Biozentrum, University of Basel, Switzerland (9)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (9)
Masaryk University, Faculty of Science (9)
Soochow University (9)
The Rockefeller University (9)

IsPrivate

False (73)

Model Flag

Non Kinetic (67)

Classification

bacteria (21)
protozoa (3)
viruses (2)

Modification

2x(15)N labeled L-lysine (37)
Not available (37)
4x(15)N labeled L-arginine (32)
15.994915 (22)
57.021464 (21)
N6 (21)
N6-dimethyl-L-lysine (18)
42.010565 (12)
4-tetrahydrothiazine-3-carboxylic acid (10)
-17.026549 (9)
4 (7)
-18.010565 (6)
4x(2)H labeled dimethylated residue (6)
79.966331 (5)
6x(2)H labeled dimethylated L-arginine (4)
15.99491 (3)
4x(2)H labeled dimethylated L-lysine (3)
57.02146 (3)
0.984016 (2)
10.008269 (2)
14.01565 (2)
144.105918 (2)
27.994915 (2)
45.029395 (2)
56.026215 (2)
59.036279 (2)
8.014199 (2)
Methionine (2)
+3amu) (1)
105.021464 (1)

Study type

Transcription profiling by array (106)
RNA-seq of coding RNA (55)
Proteomic profiling by array (43)
ChIP-seq (14)
Other (6)
Animal - One-color microarray (5)
Proteomic profiling by mass spectrometer (5)
Unknown experiment type (2)
Cell line - One-color microarray (2)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Antigen profiling (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
CLIP-Seq (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)

Release Date

2022 (767)
2021 (728)
2023 (691)
2025 (652)
2020 (589)
2024 (576)
2019 (513)
2018 (462)
2017 (444)
2016 (432)
2015 (429)
2014 (313)
2013 (247)
2012 (169)
2010 (160)
2011 (126)
2009 (103)
2026 (74)
2008 (55)
2007 (27)
2006 (11)
2005 (9)
2003 (4)
2002 (3)
2004 (1)
2001 (1)

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Quantitative Metabolomic Dataset of Avian Eye Lenses

Metabolomics is a powerful set of methods that uses analytical techniques to identify and quantify metabolites in biological samples, providing a snapshot of the metabolic state of a biological system. In medicine, metabolomics can help diagnose diseases, reveal molecular basis of a disease, and ...

2023-06-30 | MTBLS7739 | MetaboLights

Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow

Data independent acquisition-mass spectrometry (DIA-MS) coupled with liquid chromatography is a promising approach for rapid, automatic sampling of MS/MS data in untargeted metabolomics. However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions t...

2018-03-26 | MTBLS417 | MetaboLights

A Quantitative Proteomics Approach to Clinical Research with Non-Traditional Samples.

Not available

S-EPMC5260964 | biostudies-literature

Performance Characteristics of Zeno Trap Scanning DIA for Sensitive and Quantitative Proteomics at High Throughput.

Not available

S-EPMC12809002 | biostudies-literature

Quantitative Proteomics Identifies Profilin-1 as a Pseudouridine-Binding Protein

PRJNA1062713 | ENA

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris...

ORGANISM(S): Rhodopseudomonas palustris

2008-05-07 | E-GEOD-6221 | biostudies-arrayexpress

Quantitative proteomics-based analyses performed on pre-eclampsia samples in the 2004-2020 period: a systematic review.

Not available

S-EPMC7836571 | biostudies-literature

Analysis of high accuracy, quantitative proteomics data in the MaxQB database.

Not available

S-EPMC3316731 | biostudies-literature

Large-scale, quantitative proteomics reveals key proteins required for planarian regeneration initiation

PRJNA974382 | ENA

Quantitative proteomics in cardiovascular research: global and targeted strategies.

Not available