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TranscriptomicsGene Expression Profiles in a Rabbit Model of Systemic Lupus Erythematosus
We previously reported the establishment of a rabbit (Oryctolagus cuniculus) model of Systemic Lupus Erythematosus (SLE) in which peptide immunization led to lupus-like autoantibody production including anti-Sm, -RNP, -SS-A, -SS-B and -dsDNA. Some neurological symptoms in form of seizures and nystag...
ORGANISM(S): Oryctolagus cuniculus 
2010-07-23 | E-GEOD-23076 | biostudies-arrayexpress
ProteomicsProteomic identification of monoclonal antibodies from rabbit serum and analysis of FDR using differential cysteine labeling
Proteomic analysis of serum antibodies is challenging due to the non-germline origin of immunoglobulin (Ig) sequences and the complexity of Ig primary structure, with regions of hypervariable sequence interspersed within highly conserved framework sections resulting in an unusually high frequency of...
ORGANISM(S): Oryctolagus cuniculus (Rabbit) 
2014-04-24 | PXD000916 | Pride
Lc-msms Orbitrap velos Rabbit Antibody Igg 
ProteomicsAlanine scan of 11 amino acid long novel linear epitope from C.jejuni cj0669 protein [2]
A short sequence of 11 amino acids belonging to the cj0669 protein from Campylobacter jejuni NCTC 11168 which was previously identified as potentially immunogenig was analyzed via alanine scanning to narrow down the significant amino acid residues within the sequence. Twelve peptides, one representi...
ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 
2013-05-06 | E-GEOD-46651 | biostudies-arrayexpress
ProteomicsEpitope Mapping of potential novel immunogenic proteins of Klebsiella pneumoniae MGH 78578
A number of six proteins were selected during immunoscreening and further analyses. The proteins were divided in silico into overlapping 15-mer oligopeptides with an overlap of 11 residues. The microarrays were incubated with different antibodies to K. pneumoniae, C. jejuni and S. aureus. Each micro...
ORGANISM(S): Klebsiella pneumoniae 
2014-02-02 | E-GEOD-52537 | biostudies-arrayexpress
ProteomicsAlanine scan of 11 amino acid long novel linear epitope from C. jejuni cj0669 protein
A short sequence of 11 amino acids belonging to the cj0669 protein from Campylobacter jejuni NCTC 11168, which was previously identified as potentially immunogenic, was analyzed via alanine scanning to narrow down the significant amino acid residues within the sequence. Twelve peptides, one represen...
ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 
2013-04-06 | E-GEOD-45556 | biostudies-arrayexpress
ProteomicsEpitope mapping of potential novel immunogenic proteins of Campylobacter jejuni NCTC 11168
A number of seven proteins were selected during immunoscreening and further analyses. The proteins were in silico divided into overlapping 15-mer oligopeptides with an overlap of 11 residues. The microarrays were incubated with different antibodies to C. jejuni, Escherichia coli and Salmonella enter...
ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 
2013-04-06 | E-GEOD-45542 | biostudies-arrayexpress
ProteomicsAnti-DnaA antibodies specificity validation by mass spectrometry
The ubiquitous protein DnaA is a chromosomal DNA replication initiator and transcription factor. It binds to 9-bp DNA sites called "DnaA-boxes" that are localized within the replication origin (oriC) and throughout chromosomal DNA, usually in the proximity of the promoter regions. During stress, bac...
ORGANISM(S): Escherichia coli 
2026-03-02 | PXD061973 | Pride
Sample specificity Escherichia coli Chip-seq Dnaa Rabbit antibodies 
Genomicsrabbit gut metagenome
rabbit gut metagenome Metagenome
PRJNA1031537 | ENA
ProteomicsLC-MS/MS EThcD of MERS-CoV and SARS-CoV S N-linked glycopeptides from recombinant spike ectodomains and whole MERS virions
Recent outbreaks of severe acute respiratory syndrome and Middle-East respiratory syndrome along with the threat of a future coronavirus pandemic underscore the importance of finding ways to neutralize these viruses. The trimeric spike transmembrane glycoprotein S mediates entry into host cells and ...
ORGANISM(S): Severe Acute Respiratory Syndrome-related Coronavirus (ncbitaxon:694009) Middle East Respiratory Syndrome-related Coronavirus (ncbitaxon:1335626) 
2020-03-13 | MSV000085097 | MassIVE
TranscriptomicsTracing the emergence of primordial germ cells from bilaminar disc rabbit embryos and pluripotent stem cells (embryo single cell RNA-sequencing)
Rabbit embryos, as in humans, develop as bilaminar discs at gastrulation and unlike egg cylinders as in rodents. Mammalian primordial germ cells (PGCs) in all species originate during gastrulation. We sequence the transcriptomes of rabbit embryos during gastrulation, and show that rabbit PGC (rbPGC...
ORGANISM(S): Oryctolagus cuniculus 
2021-10-14 | E-MTAB-10894 | biostudies-arrayexpress
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