Rabbits - OmicsDI

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Unknown (4150)
Genomics (775)
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Proteomics (140)
Metabolomics (12)
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Homo sapiens (287)
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Caenorhabditis elegans (13)
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Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (6)
Schizosaccharomyces pombe (6)
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Streptomyces venezuelae (4)
Salmonella enterica subsp. enterica serovar Typhimurium (4)
Mycobacterium tuberculosis H37Rv (4)
Sus scrofa (4)
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Organisms

Oryctolagus cuniculus (136)
Pasteurella multocida (20)
gut metagenome (17)
rabbit gut metagenome (9)
Homo sapiens (9)
Mus musculus (6)
Rattus norvegicus (5)
Ochotona princeps (4)
Schistosoma japonicum (4)
Oryctolagus cuniculus cuniculus (4)
Vibrio cholerae (3)
Bos taurus (3)
Treponema pallidum subsp. pallidum (2)
Cryptococcus neoformans (2)
Mycobacterium tuberculosis (2)
feces metagenome (2)
Gallus gallus (2)
Arabidopsis thaliana (2)
Treponema paraluiscuniculi Cuniculi A (1)
Thomasclavelia spiroformis (1)
Mycobacterium avium subsp. paratuberculosis K-10 (1)
Leishmania enriettii (1)
Pneumocystis oryctolagi (1)
Lepus (1)
Pasteurella multocida subsp. multocida str. P52VAC (1)
Sarcoptes scabiei (1)
Rabbit hemorrhagic disease virus (1)
Mycobacterium tuberculosis H37Ra (1)
Procavia capensis (1)
Galeopterus variegatus (1)

Repository

biostudies-arrayexpress (855)
ENA (451)
geo (96)
pride (59)
MassIVE (26)
iProX (22)
jPOST (8)
MetaboLights (8)
EVA (3)
GNPS (3)
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PanoramaPublic (1)
PAXDB (1)

Tissue

Saliva (9)
Cell culture (8)
Sperm (5)
Liver (5)
Retina (4)
Tear (3)
Spleen (3)
Conjunctiva (2)
Iris (2)
Sclera (2)
Eye (2)
Cornea (2)
Vitreous humor (2)
Spermatozoon (2)
Heart (2)
Blood plasma (2)
Embryo (2)
Permanent cell line cell (2)
Muscle (1)
Spermary (1)
Sublaminar layer S2 (1)
Adipose-derived stromal cell (1)
Mesenchymal stem cell of adipose (1)
Aorta thoracica (1)
Retinal cell (1)
Aortic endothelial cell (1)
Saliva-secreting gland (1)
Bone matrix (1)
Pericardium (1)
Salivary gland (1)

Disease

Normal (7)
Infertility (4)
Chronic myeloid leukemia (2)
Neuroblastoma (2)
Male infertility (2)
Schistosomiasis (2)
NTN (1)
Carcinoma (1)
Breast carcinoma (1)
Pancreatitis (1)
Myopia (1)
Cardiovascular system disease (1)
Atherosclerosis (1)
Bacterial sepsis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (41)
Bottom-up proteomics (6)
Mass spectrometry (5)
SWATH MS (5)
Gel-based experiment (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (3)
NMR spectroscopy (2)
Data-independent acquisition (2)
Mass spectrometry assay (1)
ESI (1)

Instrument Platform

Illumina HiSeq 2500 (36)
Illumina HiSeq 4000 (31)
Illumina HiSeq 2000 (26)
NextSeq 500 (21)
Illumina NovaSeq 6000 (16)
Illumina MiSeq (12)
NextSeq 550 (7)
Illumina Genome Analyzer IIx (6)
Illumina HiSeq 1500 (5)
Illumina NovaSeq X (3)
NextSeq 2000 (3)
AB 5500 Genetic Analyzer (2)
GenePix 4000B [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 1000 (2)
SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
Nanodrop 2000c spectrophotometer (1)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
DNA 7500 Bioanalyzer Chips (1)
Dell PowerEdge 630 with Intel Xeon E5-2630 processor (8 cores 16 threads) and 94 GB memory running CentOS Linux release 7.5.1804. (1)
Tapestation (1)
Genetix aQuire (1)
None (1)
Agilent Technologies hybridisation chamber and Agilent Technologies hybridisation oven (1)
Agilent Technologies G2505C dual laser scanner (1)

Publication Date

2013 (118)
2014 (116)
2015 (106)
2010 (106)
2012 (90)
2011 (66)
2016 (65)
2021 (44)
2020 (41)
2018 (39)
2024 (36)
2023 (36)
2022 (36)
2019 (36)
2026 (28)
2025 (25)
2008 (24)
2017 (22)
2009 (21)
2007 (10)
2006 (10)
2004 (2)
2005 (1)

UNIPROT ID/AC

G1SVB3_RABIT (1)
A0A5F9C4L7_RABIT (1)
G1TKE5_RABIT (1)
G1T4D5_RABIT (1)
G1U8G0_RABIT (1)
G1SSN8_RABIT (1)
G1T4N8_RABIT (1)
G1SMH9_RABIT (1)
G1U2A1_RABIT (1)
G1U3Q6_RABIT (1)
A0A5F9CGP0_RABIT (1)
SAA2_RABIT (1)
G1T2S0_RABIT (1)
G1TDT3_RABIT (1)
CPNS1_RABIT (1)
G1T8H5_RABIT (1)
G1TL08_RABIT (1)
G1SZP6_RABIT (1)
A0A5F9CNA2_RABIT (1)
G1TKV1_RABIT (1)
G1TSW8_RABIT (1)
U3KM54_RABIT (1)
G1SDU8_RABIT (1)
G1SJQ2_RABIT (1)
A0A5F9D7S5_RABIT (1)
G1TEP2_RABIT (1)
G1U207_RABIT (1)
G1SPW1_RABIT (1)
G1SN00_RABIT (1)
G1TN29_RABIT (1)

CHEBI ID

CHEBI:15366 (4)
CHEBI:15428 (4)
CHEBI:16919 (4)
CHEBI:16737 (4)
CHEBI:15741 (4)
CHEBI:15354 (4)
CHEBI:46961 (3)
CHEBI:17268 (3)
CHEBI:1148 (3)
CHEBI:16856 (3)
CHEBI:17712 (3)
CHEBI:27480 (3)
CHEBI:15724 (3)
CHEBI:17750 (3)
CHEBI:18132 (3)
CHEBI:78320 (3)
CHEBI:25017 (3)
CHEBI:37084 (3)
CHEBI:16449 (3)
CHEBI:16765 (3)
CHEBI:48430 (3)
CHEBI:32816 (3)
CHEBI:17368 (3)
CHEBI:17295 (3)
CHEBI:16828 (3)
CHEBI:16704 (3)
CHEBI:15891 (3)
CHEBI:18202 (2)
CHEBI:139134 (2)
CHEBI:28123 (2)

Metabolite Name

Scyllo-inositol (2)
Isobutyrate (2)
Corticosterone (2)
Phytosphingosine (2)
9H-xanthine (2)
Formate (2)
Acetate (2)
Leucine (2)
Tryptamine (2)
Methionine (2)
Histidine (2)
Glutamate (2)
Glycerol (2)
Valine (2)
L-kynurenine (2)
Glycine (2)
Lysine (2)
Tyrosine (2)
Lactate (2)
Alanine (2)
Threonine (2)
Succinate (2)
Phenylalanine (2)
Isoleucine (2)
Glutamine (2)
Glucose (2)
Fumarate (2)
Citrate (2)
Pyruvate (2)
L-tryptophan (2)

First Public Date

2025 (61)
2026 (58)
2024 (49)
2022 (48)
2023 (41)
2020 (38)
2021 (33)
2014 (32)
2013 (20)
2019 (16)
2017 (16)
2018 (15)
2015 (14)
2016 (10)

Classification

bacteria (42)
helminths (4)
fungi (2)
viruses (2)
protozoa (1)

Study type

ChIP-seq (295)
Transcription profiling by array (133)
ChIP-chip by tiling array (116)
RNA-seq of coding RNA (90)
ChIP-chip by array (64)
Proteomic profiling by array (22)
Methylation profiling by high throughput sequencing (18)
RNA-seq of non coding RNA (17)
Other (14)
CUT&RUN (11)
RIP-seq (10)
Comparative genomic hybridization by array (8)
Animal - High-throughput sequencing (6)
Cell line - High-throughput sequencing (6)
CLIP-seq (6)
Unknown experiment type (5)
Transcription profiling by tiling array (5)
Methylation profiling by array (5)
RNA-seq of coding RNA from single cells (5)
Human - High-throughput sequencing (3)
High-throughput sequencing (2)
DNA-seq (2)
RNA-seq of total RNA (2)
RIP-chip by array (1)
Animal - One-color microarray (1)
CLIP-Seq (1)
Trajectory (1)
Genotyping by array (1)
Antigen profiling (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

2022 (505)
2023 (411)
2021 (409)
2025 (361)
2020 (360)
2018 (303)
2024 (301)
2019 (289)
2015 (274)
2014 (246)
2016 (243)
2013 (233)
2017 (230)
2012 (186)
2010 (157)
2011 (153)
2009 (61)
2026 (60)
2008 (59)
2007 (30)
2006 (26)
2005 (25)
2004 (17)
2003 (14)
2002 (12)
1999 (12)
2001 (11)
2000 (9)
1998 (7)
1970 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (5)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain. (4)
Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (2)
Institute of Gene Biology, Russian Academy of Sciences, Group of Chromatin Biology (2)
Zhejiang Academy of Agricultural Sciences (2)
University of Houston, Houston, TX 77204 (2)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (2)
Professor Department of Laboratory Medicine and Pathology Mayo Clinic 200 First St SW, Rochester, MN – 55905, USA (1)
Centro de Biología Molecular Severo Ochoa (CSIC-UAM), Universidad Autónoma de Madrid (1)
Division of Neurobiology The Roslin Institute Royal (Dick) School of Veterinary Studies College of Medicine and Veterinary Medicine University of Edinburgh Easter Bush Midlothian EH25 9RG SCOTLAND, UK t: 44 (0)131 651 9119 e: T.M.Wishart@Roslin.ed.ac.uk website: http://www.roslin.ed.ac.uk/tom-wishart http://www.euanmacdonaldcentre.com/research.html (1)
Department of Radiology Charité - Universitätsmedizin Berlin Charitéplatz 1 10117 Berlin Germany (1)
Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX, USA (1)
Shanghai Veterinary Research Institute,Chinese Academy of Agricultural Sciences (1)
Parasitology, University of São Paulo/Institute of Biomedical Sciences, Brazil (1)
Instituto Valenciano de Investigaciones Agrarias (IVIA), Polígono La Esperanza nº 100, 12400 Segorbe, Castellón, Spain (1)
Clinical Diagnostic Laboratory, Department of Clinical Veterinary Medicine, Vetsuisse Faculty, University of Bern, Bern, Switzerland. (1)
College of Polymer Science and Engineering, State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu, 610065, People's Republic of China (1)
Instituto de Ciencia y Tecnologia Animal Iniversitat Politecnica de Valencia (UPV) Valencia, Spain (1)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València (UPV) Valencia (Spain) (1)
Harvard Medical School, Brigham and Women's Hospital (1)
Wilmot Cancer Institute, University of Rochester Medical Center, 601 Elmwood Avenue, Box 704, Rochester, New York 14618, USA (1)
Key Laboratory of National Health and Family Planning Commission on Parasitic Disease Control and Pre-vention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, 117 Meiyuan Yangxiang, Wuxi 214064, Jiangsu, China. (1)
Parasitology Laboratory, Institute of Natural Resources and Agrobiology (IRNASA, CSIC). Cordel de Merinas, 40-52, 37008 Salamanca, Spain (1)
Biomedical Research Centre, University Hospital Hradec Kralove, Hradec Kralove, Czech Republic (1)
Peking University Third Hospital (1)
Max Planck Unit for the Science of Pathogens, charitéplatz 1, D-10117 Berlin, Germany (1)
Professor and Robert A. Welch Chair in Biochemistry Department of Pharmacology and Neuroscience University of North Texas Health Science Center, FortWorth (1)
Department of Chemistry, Vanderbilt University 5423 Stevenson Center, Nashville, TN 37235 (1)
Proteomics Department, Institute of Cellular Biology and Pathology (1)

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PDE-4 inhibition alters gene expression and improves INH-mediated clearance of Mtb in rabbit lungs

Tuberculosis kills nearly 2 million people through out the world, every year. The outcome of M. tuberculosis infection is determined by the host and bacterial factors. A strong host immune response controls the growth of the bacilli effectively. However, in a host with suboptimal immune response,...

ORGANISM(S): Oryctolagus cuniculus

2011-03-16 | E-GEOD-27992 | biostudies-arrayexpress

Gene Expression Profiles in a Rabbit Model of Systemic Lupus Erythematosus

We previously reported the establishment of a rabbit (Oryctolagus cuniculus) model of Systemic Lupus Erythematosus (SLE) in which peptide immunization led to lupus-like autoantibody production including anti-Sm, -RNP, -SS-A, -SS-B and -dsDNA. Some neurological symptoms in form of seizures and nystag...

ORGANISM(S): Oryctolagus cuniculus

2010-07-23 | E-GEOD-23076 | biostudies-arrayexpress

Kinetics of progressive pulmonary cavitary TB disease in rabbits

Every year, tuberculosis kills nearly 1.8 million people through out the world. Though outcome of M. tuberculosis infection into active disease is determined by the host and bacterial factors, a strong host immune response controls the growth of the bacilli effectively. However, in a host with su...

ORGANISM(S): Oryctolagus cuniculus

2011-12-07 | E-GEOD-33094 | biostudies-arrayexpress

An overexpression of lipoprotein lipase leads to an alteration in the skeletal muscle metabolome in transgenic rabbits

Not available

ORGANISM(S): Oryctolagus cuniculus

ST001684 | MetabolomicsWorkbench

Early innate immunity determines outcome of Mycobacterium tuberculosis pulmonary infection in rabbits

In our rabbit model of pulmonary tuberculosis, infection with Mtb HN878, a hyper-virulent W-Beijing strain, results in progressive cavitary disease. However, infection of rabbit lungs with Mtb CDC1551, a hyper-immunogenic strain is effectively controlled overtime, establishing latent Mtb infection....

ORGANISM(S): Oryctolagus cuniculus

2013-08-17 | E-GEOD-49947 | biostudies-arrayexpress

B cell epitope mapping of SARS-CoV-2 spike vaccinated rabbits

This experiment aims to profile polyclonal antibody binding profiles in serum from vaccinated animals relative to antibody function in a virus neutralization assay. Rabbits received three vaccinations with a DNA vaccine encoding the spike protein of the SARS-CoV-2 index strain. Serum samples were se...

ORGANISM(S): Oryctolagus cuniculus

2023-08-31 | E-MTAB-13040 | biostudies-arrayexpress

Comparative proteomic analysis revealed complex responses to Bordetella bronchiseptica infections in spleen in rabbits

Thirty five-week-old healthy Newzealand meet rabbits were used for bacteria infection. Bb infections were performed as the following: Finally, the dosage was 4.6×109CFU, and the ear vein was used in rabbits in the challenge group. Blood samples were collected for anticoagulant blood cell assay and s...

ORGANISM(S): Oryctolagus cuniculus (Rabbit)

2020-08-24 | PXD016866 | Pride

Effect of Etanercept on Active Pulmonary Tuberculosis in Rabbits

Treatment of chronic inflammatory diseases with tumor necrosis factor alpha antagonists has been associated with increased risk of tuberculosis (TB). We examined the usefulness of the rabbit model of active pulmonary TB for studying the impact of the human immune modulatory reagent etanercept on the...

ORGANISM(S): Oryctolagus cuniculus

2014-01-28 | E-GEOD-54442 | biostudies-arrayexpress

Targeted MS assay to evaluate Cereblon neosubstrate changes in rabbit embryos following maternal administration of IMiDs

Targeted protein degradation is the selective removal of a protein of interest through hijacking intracellular protein cleanup machinery. This rapidly growing field currently relies heavily on the use of the E3 ligase Cereblon (CRBN) to target proteins for degradation, including the immunomodulatory...

ORGANISM(S): Oryctolagus Cuniculus

2024-07-02 | PXD050568 | panorama

New Zealand White Rabbits and Fujian Yellow Rabbits Cecal Contents

New Zealand White Rabbits and Fujian Yellow Rabbits Cecal Contents Raw sequence reads

PRJNA1333644 | ENA

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