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MetabolomicsIntegration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
The development of reliable, mixed-culture biotechnological processes hinges on understanding how microbial ecosystems respond to disturbances. Here we reveal extensive phenotypic plasticity and niche complementarity in oleaginous microbial populations from a biological wastewater treatment plant. W...
2021-04-06 | MTBLS2021 | MetaboLights
ProteomicsA proteome analysis of freezing tolerance in red clover (Trifolium pratense L.)
Improvement of freezing tolerance of red clover (Trifolium pratense L.) would increase its persistence under cold climate. In this study, we assessed the freezing tolerance and compared the proteome composition of non-acclimated and cold-acclimated plants of two initial cultivars of red clover: Endu...
ORGANISM(S): Trifolium pratense subsp. pratense 
2016-03-15 | PXD003689 | Pride
Red clover  cold acclimation  proteomic analysis  recurrent selection  freezing tolerance  plant abiotic stress. 
UnknownOptimization of iTRAQ labelling coupled to OFFGEL fractionation as a proteomic workflow to the analysis of microsomal proteins of Medicago truncatula roots.
Not available
S-EPMC3442994 | biostudies-literature
MetabolomicsUntargeted metabolomics sheds light on the secondary metabolism of fungi triggered by choline-based ionic liquids
Fungal secondary metabolites constitute a rich source of yet undiscovered bioactive compounds. Their production is often silent under standard laboratory conditions, but the production of some compounds can be triggered simply by altering the cultivation conditions. The usage of an organic salt - io...
2022-07-15 | MTBLS5072 | MetaboLights
UnknownExposure of Lycopersicon esculentum to microcystin-LR: effects in the leaf proteome and toxin translocation from water to leaves and fruits.
Not available
S-EPMC4073132 | biostudies-literature
ProteomicsIntegrative analysis of two russeted and non-russeted closely related apple varieties during fruit development provides new insights about the cuticle/suberin interplay
Apple russeting is characterized by the deposition of suberin in the inner part of the epidermal cell walls. It develops at the fruit surface when the integrity of the cuticle has been lost. Cutin and wax composition (including triterpene profile) is also affected in russeted skin. In the present w...
ORGANISM(S): Malus domestica 
2022-02-22 | PXD022712 | Pride
Metabolomics Integrative analysis : russeting Conjugated triterpene Lc-ms/ms Suberin Apple skin. 
ProteomicsThe resistance of oilseed rape microspore-derived embryos to osmotic stress is associated with the accumulation of proteins in energy metabolism, redox homeostasis and up-regulation of abscisic acid and cytokinin contents
The aim of the present study was to investigate the response of rapeseed microspore-derived embryos (MDE) to osmotic stress at proteome level. The PEG-induced osmotic stress was studied in cotyledonary MDE of two genotypes: Cadeli (D), and Viking (V), which were previously reported to reveal contras...
ORGANISM(S): Brassica napus (Rape) 
2021-06-14 | PXD024552 | Pride
Rt-qpcr Brassica napus Microspore Osmotic stress 2d-dige 
ProteomicsPathogenic leptospires modulate protein expression and post-translational modifications in response to mammalian host signals
A large body of work has demonstrated that leptospires regulate and modify gene expression in response to environmental cues, as encountered during disease transmission, including changes in temperature, osmolarity, concentration of iron, the presence of serum, and interaction with macrophages. Howe...
ORGANISM(S): Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 
2017-08-31 | PXD006995 | Pride
Dige Proteomics Post-translational modifications Spirochetes Leptospira 
ProteomicsAn improved protocol to study the plant cell wall proteome
Cell wall proteins were extracted from alfalfa stems according to a 3-steps extraction procedure using sequentially CaCl2, EGTA and LiCl-complemented buffers. The efficiency of this protocol for extracting cell wall proteins was compared with the 2 previously published methods optimized for alfalfa...
ORGANISM(S): Medicago sativa (Alfalfa) 
2015-04-14 | PXD001927 | Pride
Lc-msms Stem Proteomics 2d-gel electrophoresis Alfalfa Cell wall 
MetabolomicsA microfluidics-based in vitro model of the gastrointestinal human-microbe interface
Changes in the human gastrointestinal microbiome are associated with several diseases. To infer causality, experiments in representative models are essential, but widely used animal models exhibit limitations. Here we present a modular, microfluidics-based model (HuMiX, human–microbial crosstalk), w...
2017-07-28 | MTBLS328 | MetaboLights
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