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TranscriptomicsTranscription profiling of mouse skin carcinogenesis in FVB/N and Tg.Ac mice
Female FVB/N and Tg.Ac (hemizygotes) mice 3-5 weeks of age were purchased from Harlan UK and Taconic UK, respectively. The mice were contained in an isolator and maintained at 19C with 50% relative humidity and a 12-hour light-dark cycle. Following a 1 week acclimatisation period the dorsal skin o...
ORGANISM(S): Mus musculus 
2005-10-01 | E-MEXP-188 | biostudies-arrayexpress
ProteomicsAnalysis of cardiac ischemia-reperfusion injury using DIA proteomics and N-terminomics
Data used in the publication: Analysis of cardiac ischemia-reperfusion injury using DIA proteomics and N-terminomics reveals alterations in mitochondrial function and metabolism
ORGANISM(S): Rattus (ncbitaxon:10114) 
MSV000092906 | MassIVE
TranscriptomicsThe miR-17/92 Polycistron Is Up-regulated in Sonic Hedgehog-Driven Medulloblastomas and Induced by N-myc in Sonic Hedgehogâ??Treated Cerebellar Neural Precursors
Medulloblastoma is the most common malignant pediatric brain tumor, and mechanisms underlying its development are poorly understood. We identified recurrent amplification of the miR-17/92 polycistron proto-oncogene in 6% of pediatric medulloblastomas by high-resolution single-nucleotide polymorphism...
ORGANISM(S): Homo sapiens 
2010-04-14 | E-GEOD-21166 | biostudies-arrayexpress
TranscriptomicsFunctional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli
n-Butanol has been proposed as an alternative biofuel to ethanol, and both Escherichia coli and Saccharomyces cerevisiae have been engineered to produce it. Unfortunately, n-butanol is more toxic than ethanol to these organisms. To understand the basis for its toxicity, cell wide studies were cond...
ORGANISM(S): Escherichia coli 
2010-05-16 | E-GEOD-16973 | biostudies-arrayexpress
ProteomicsAn oligosaccharyltransferase from Leishmania donovani increases the N-glycan occupancy on plant-produced IgG1
The monoclonal antibodies rituximab and cetuximab were transiently expressed in leaves of Nicotiana benthamiana plants and purified by affinity chromatography using protein A. Purified antibodies were analysed by intact MS. Purified antibodies were also subjected to trypsin digestion followed by LC-...
ORGANISM(S): Nicotiana benthamiana 
2023-07-31 | PXD043623 | Pride
Recombinant protein Antibody Oligosaccharyltransferase N-glycosylation 
Transcriptomicscells-C/N balance in cells
adt07-02_c-n_cells - cells - How does the C/N balance act in cells ? - 3 doses of sugar (Carbon) and 3 doses of nitrogen were applied to cells : C : 7,5g, 15g, 30g; and N : 25mM, 2.5mM and 0.25mM 16 dye-swap - dose response
ORGANISM(S): Arabidopsis thaliana 
2012-03-23 | E-GEOD-36623 | biostudies-arrayexpress
ProteomicsArginine Methylation Regulates SARS-CoV-2 Nucleocapsid Protein Function and Viral Replication
Viral proteins are known to be methylated by host protein arginine methyltransferases (PRMTs) playing critical roles during viral infections. Herein, we show that PRMT1 methylates SARS-CoV-2 nucleocapsid (N) protein at residues R95 and R177 within RGG/RG sequences. Arginine methylation of N protein ...
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD025763 | Pride
Prmt1 Sars-cov-2 Rna binding Stress granules Nucleocapsid (n) protein Arginine methylation Type i prmt inhibitor Condensate Rgg/rg motif 
UnknownTaxonomic evaluation of eleven species of Microcyclops Claus, 1893 (Copepoda, Cyclopoida) and description of Microcyclops inarmatus sp. n. from America.
Not available
S-EPMC4978000 | biostudies-literature
ProteomicsMannose receptor (CD206) N-glycosylation
To explore the influence of glycosylation on mannose receptor (MR) binding to glycan ligands, we used the mouse CTLD4-7, fused to the Fc-portion of human IgG (MR-Fc) and human full-length MR. A detailed N- and O-glycopeptide analysis was performed using tryptic glycopeptides. In addition the samples...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2023-03-11 | PXD034781 | Pride
Glycosylation O-linked glycosylation Mass spectrometry Glycoproteomics Glycan microarray Mannose receptor Glycobiology N-linked glycosylation Lectin 
ProteomicsSubtiligase N-terminomics for identification of cleavage sites in mice brain and immunoprecipitated PrP
Subtiligase-based N-terminomics (Abu N-terminal tagging) of whole mouse brain and immunoprecipitated prion protein. Mouse expressing either WT or mutant (S3) form of PrP were used in this study. Five replicates for single brain experiments and one replicate for combined brains approach are included....
ORGANISM(S): Mus Musculus (ncbitaxon:10090) 
2023-07-27 | MSV000092542 | MassIVE
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