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ProteomicsAutoreactive T Cells Recognize Unique MBP Peptides Naturally Presented by EBV-Infected B Cells and Multiple Sclerosis Brain Tissue
Epstein-Barr virus (EBV) is involved in causing and probably also perpetuating multiple sclerosis (MS). Among several mechanisms, how EBV may contribute, are transcriptome alterations including changes of antigen processing and preferential presentation of both viral and self-antigens. Here, we foun...
ORGANISM(S): Homo sapiens (Human) 
2026-06-19 | PXD068927 | Pride
Mbp Ebv-infected b-cells Human Lc-ms/ms 
ProteomicsAn Integrated Systems Approach Unveils New Aspects of Microoxia-mediated Regulation in Bradyrhizobium diazoefficiens
Using an integrated systems approach, the expressed proteome of B. diazoefficiens strain 110scp4 was measured under i) normal, oxic growth, and ii) microoxic growth condtions. This included, as a first step, the sequencing and de novo assembly of the genome of this widely used rhizobial model strain...
ORGANISM(S): Bradyrhizobium diazoefficiens 
2019-05-30 | PXD012491 | Pride
Comparative genomics Microoxia Proteogenomics Shotgun proteomics Symbiosis B. diazoefficiens Genome sequencing Transcriptomics Rhizobia Fnr/crp proteins 
UnknownQuantitative proteome of bacterial periplasmic predation by Bdellovibrio bacteriovorus reveals a prey-lytic protease.
Not available
S-EPMC12546842 | biostudies-literature
ProteomicsDifferential response to herbivory by Helicoverpa armigera in Cajanus cajan and Cajanus platycarpus
In synchrony with deciphering the transcriptomic basis of pod borer resistance in C. platycarpus, the aim of the present work was to corroborate and understand how the leaf proteome in these two contrasting cajanus species explain the differential responses to herbivory. To the best of our knowledge...
ORGANISM(S): Cajanus cajan 
2020-07-27 | PXD017679 | Pride
Cajanus cajan Response to pest attack Lc-msms 
ProteomicsThe bovine cumulus proteome of cumulus oocyte complexes that successfully matured or failed to mature after maturation in-vitro and in-vivo
The oocyte forms a complex with their somatic cumulus cells within the follicle throughout the preovulatory maturation steps. Cumulus cells support their oocyte not only through mechanical protection but also with a close bidirectional exchange of metabolites. Analysis of the oocytes cumulus gives t...
ORGANISM(S): Bos taurus (Bovine) 
2020-06-30 | PXD016679 | Pride
Cumulus Proteomics Oocyte 
UnknownAn Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens.
Not available
S-EPMC6515984 | biostudies-literature
ProteomicsHEK293 cells LC-MSMS
The iTRAQ 4-plex experiment was carried out with 2 biological replicates of untreated HEK cells (114 and 116 label) and 2 biological replicates of HEK cells treated with geneticin (16 µM) for 32 h (115 and 117 label).
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-22 | MSV000079998 | MassIVE
ProteomicsGrape ASR-silencing sways nuclear proteome and histone marks
The biological roles of ASRs (Abscisic acid, Stress, Ripening proteins) involved in certain crucial switches of plant development (grain and pollen germination, senescence, fruit ripening), and responses to environmental cues (drought, salinity, cold, nutrient depletion, fungus infection, heavy m...
ORGANISM(S): Vitis vinifera (Grape) 
2022-02-22 | PXD004988 | Pride
Grape Itraq Lc-ms/ms 
UnknownProteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver.
Not available
S-EPMC4922570 | biostudies-literature
ProteomicsEngineered Peptide Barcodes for Binding Protein Generation
Binding protein generation relies on laborious screening cascades that process candidate molecules individually. To break with this paradigm, we developed NestLink, a binder selection and identification technology able to biophysically characterize thousands of library members at once without handli...
ORGANISM(S): synthetic construct (code 12) 
2019-01-15 | PXD009301 | Pride
Peptide barcode 
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