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TranscriptomicsCodon usage bias is correlated with gene expression levels in the fission yeast Schizosaccharomyces pombe.
Usage of synonymous codons represents a characteristic pattern of preference in each organism. It has been inferred that such bias of codon usage has evolved as a result of adaptation for efficient synthesis of proteins. Here we examined synonymous codon usage in genes of the fission yeast Schizosac...
ORGANISM(S): Schizosaccharomyces pombe 
2010-06-20 | E-GEOD-13554 | biostudies-arrayexpress
TranscriptomicsRNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe [Illumina Genome Analyzer]
RNA interference (RNAi) is a gene silencing mechanism conserved from fungi to mammals. Small interfering RNAs are products and mediators of the RNAi pathway and act as specificity factors in recruiting effector complexes. The Schizosaccharomyces pombe genome encodes one of each of the core RNAi prot...
ORGANISM(S): Schizosaccharomyces pombe 972h- 
2014-01-23 | E-GEOD-54194 | biostudies-arrayexpress
TranscriptomicsExpression data from fission yeast Schizosaccharomyces pombe under nitrosative stress
Nitric oxide being a versatile molecule inside biological systems, from being both a cell signaling molecule to a potent stress agent, has significant effect in the transcriptional response in fission yeast. We have used fission yeast microarrays to identify cellular targets of Nitric Oxide (NO) and...
ORGANISM(S): Schizosaccharomyces pombe 
2015-01-30 | E-GEOD-50899 | biostudies-arrayexpress
MetabolomicsUnexpected similarities between the Schizosaccharomyces and human blood metabolomes, and novel human metabolites (Blood fraction)
Metabolomics, a new branch of chemical biology, provides compositional and quantitative information about the state of organism or cell at the levels of metabolite constituents. We here report non-targeted metabolome of human blood that is made up of plasma and red blood cells (RBCs), using liquid-c...
2014-07-08 | MTBLS87 | MetaboLights
GenomicsGenome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [ChIP-Seq data]
Inorganic phosphate is an essential nutrient required by organisms for growth. During phosphate starvation, Saccharomyces cerevisiae activates the phosphate signal transduction (PHO) pathway leading to the expression of the secreted acid phosphatase, PHO5. The fission yeast, Schizosaccharomyces pomb...
ORGANISM(S): Schizosaccharomyces pombe 972h- 
2013-01-02 | E-GEOD-39498 | biostudies-arrayexpress
TranscriptomicsHigh resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture [Expression Array]
Eukaryotic genomes are folded into three-dimensional structures that govern diverse hromosomal procsses. Studeis in Drosophila and mammals have revealed large self-associating tomological domains whose borders are enriched in cohesin/CTCF factors that are required for long-range intrations. Howeve...
ORGANISM(S): Schizosaccharomyces pombe 
2014-10-22 | E-GEOD-57159 | biostudies-arrayexpress
ProteomicsS. pombe LC-MS G4-binding proteins_2
Affinity-purification study of G-quadruplex binding proteins from the S. pombe proteomics.
ORGANISM(S): Schizosaccharomyces pombe 927 
2021-09-09 | PXD020921 | Pride
Lc-ms G-quadruplex S. pombe 
TranscriptomicsStructural and functional characterization of the N-terminus of Schizosaccharomyces pombe Cwf10
The spliceosome is a dynamic macromolecular machine that catalyzes the removal of introns from pre-mRNA to make mature message. Schizosaccharomyces pombe Cwf10 (homolog Saccharomyces cerevisiae Snu114 and of Human U5-116K), an integral member of the U5 snRNP, is a GTPase that shares sequence homolog...
ORGANISM(S): Schizosaccharomyces pombe 
2013-09-25 | E-GEOD-47573 | biostudies-arrayexpress
TranscriptomicsGenome-wide gene expression in response to mating pheromones in S. pombe
Fission yeast cells undergo sexual differentiation in response to nitrogen starvation. In this process haploid M and P cells first mate to form diploid zygotes, which subsequently enter meiosis and sporulate. Prior to mating, M cells secrete M-factor and P-cells secrete P-factor, and these diffusibl...
ORGANISM(S): Schizosaccharomyces pombe 
2007-08-21 | E-GEOD-5323 | biostudies-arrayexpress
ProteomicsS. pombe LC-MS G4-binding proteins
Affinity-purification study of G-quadruplex binding proteins from the S. pombe proteomics.
ORGANISM(S): Schizosaccharomyces pombe 927 
2021-09-07 | PXD020907 | Pride
Lc-mc G-quadruplex Schizosaccharomyces pombe 
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