Salmo salar - OmicsDI

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Unknown (849)
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Proteomics (41)
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Organisms

Salmo salar (364)
Oncorhynchus mykiss (107)
Oncorhynchus tshawytscha (41)
Coregonus clupeaformis (39)
Osmerus mordax (39)
Oncorhynchus nerka (16)
Lepeophtheirus salmonis (11)
Oncorhynchus kisutch (11)
Oncorhynchus gorbuscha (6)
Aliivibrio salmonicida LFI1238 (4)
Salvelinus fontinalis (4)
salmonid fish (4)
Salvelinus alpinus (3)
Danio rerio (3)
Oncorhynchus keta (2)
Fundulus heteroclitus (2)
Salmo trutta (2)
Coregonus maraena (2)
Cyprinus carpio (2)
Gallus gallus (2)
Esox lucius (1)
Eohaustorius estuarius (1)
Caligus rogercresseyi (1)
Anguilla anguilla (1)
Cyclopterus lumpus (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)
Mus musculus (1)
Poecilia reticulata (1)
Xenotilapia melanogenys (1)

Organisms

Salmo salar (234)
Lepeophtheirus salmonis (7)
fish gut metagenome (3)
fish metagenome (3)
Aliivibrio wodanis (2)
Oncorhynchus mykiss (2)
Vibrio sp. J383 (1)
Candidatus Branchiomonas cystocola (1)
Saprolegnia diclina VS20 (1)
Saprolegnia sp. salmon/trout/2012 (1)
Caligus rogercresseyi (1)
Streptococcus phocae subsp. salmonis (1)
Gyrodactylus salaris (1)
Pseudomonas sp. HK3 (1)
Aliivibrio salmonicida (1)
Oncorhynchus tshawytscha (1)
Aeromonas salmonicida subsp. salmonicida (1)
Moritella viscosa (1)
Yersinia ruckeri (1)
Tenacibaculum ovolyticum (1)
Flavobacterium facile (1)
Flavobacterium psychraquaticum (1)
Tenacibaculum maritimum (1)
Epinephelus fuscoguttatus (1)
Salmo trutta fario (1)
Aeromonas salmonicida (1)
Salvelinus fontinalis (1)
Piscirickettsia salmonis (1)
skin metagenome (1)
Leuconostoc mesenteroides subsp. mesenteroides (1)

Repository

ENA (441)
geo (244)
biostudies-arrayexpress (148)
pride (34)
EVA (5)
MetaboLights (5)
MassIVE (4)
PAXDB (3)
BioModels (1)
FAIRDOMHub (1)
GNPS (1)

Tissue

Liver (6)
Gill (3)
Bone (2)
Skin (2)
Muscle (2)
Blood serum (2)
Whole body (2)
Blood cell (2)
Ovarian fluid (1)
Gill cell line (1)
Mucus secretion (1)
Bone tissue (1)
Small intestine mucosa (1)
Gastric mucosa (1)
Intestine (1)
Seed (1)
Adipose tissue (1)
Gut (1)
Heart (1)
Brain (1)
Blood plasma (1)
Root (1)
Seminal plasma (1)
Spleen (1)
Epithelial cell (1)
Kidney (1)
Intestinal mucosa (1)

Disease

Normal (1)
Disease by environmental exposure (1)
Septicemia (1)
Parasitic infectious disease (1)
Inflammation (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (21)
Bottom-up proteomics (5)
Mass spectrometry (4)
Gel-based experiment (3)
Top-down proteomics (3)
Mass spectrometry assay (1)
Metaproteomics (1)
SWATH MS (1)
Data-independent acquisition (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
Illumina HiSeq 4000 (7)
Illumina HiSeq 2500 (6)
- (5)
Liquid Chromatography MS - positive - reverse phase (4)
GenePix 4000B [Axon Instruments] (2)
Illumina NovaSeq X (2)
Illumina HiSeq 3000 (2)
Q Exactive HF (2)
Agilent Technologies Scanner, model G2565CA (1)
Axon GenePix Pro scanner (1)
BAS-1800 [FUJIFILM] (1)
ScanArray 5000 [PerkinElmer] (1)
NextSeq 1000 (1)
Illumina HiSeq X (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
UPLC system (Vanquish, Thermo Fisher Scientific) coupled with a high-resolution quadrupole-orbitrap mass spectrometer Orbitrap Exploris 240 MS, Thermo Fisher Scientific. (1)
Orbitrap Fusion (1)
Q Exactive (1)
Liquid Chromatography MS - positive (1)

Publication Date

2012 (37)
2010 (34)
2021 (32)
2011 (30)
2013 (27)
2022 (24)
2015 (24)
2019 (23)
2020 (21)
2014 (21)
2024 (19)
2009 (19)
2025 (17)
2018 (17)
2023 (16)
2026 (16)
2016 (16)
2008 (15)
2007 (12)
2017 (11)
2005 (8)
2006 (4)
2004 (3)

UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

CHEBI ID

CHEBI:13097 (1)
CHEBI:21278 (1)
CHEBI:63163 (1)
CHEBI:6209 (1)
CHEBI:44590 (1)
CHEBI:21260 (1)
CHEBI:44513 (1)
CHEBI:6206 (1)
CHEBI:44708 (1)
CHEBI:44466 (1)
CHEBI:13094 (1)
CHEBI:47822 (1)
CHEBI:60107 (1)
CHEBI:21486 (1)
CHEBI:60111 (1)
CHEBI:43088 (1)
CHEBI:47823 (1)
CHEBI:28538 (1)
CHEBI:47819 (1)
CHEBI:47821 (1)
CHEBI:21601 (1)
CHEBI:7203 (1)
CHEBI:77859 (1)
CHEBI:19473 (1)
CHEBI:11524 (1)
CHEBI:1021 (1)
CHEBI:12542 (1)
CHEBI:47984 (1)
CHEBI:1022 (1)
CHEBI:42925 (1)

Metabolite Name

Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Tris(2-butoxyethyl) phosphate (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
Cholic acid (2)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
1-Hexadecanoyl-sn-glycerol (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
Alpha-TOCHOPHERYL ACETATE (1)
NCGC00186665-03!2,3-dihydroxypropyl hexadecanoate (1)
[(1S,6S,7R,10R,15S,16R,18S,19R,20R)-6-(3-Furyl)-8,9,18,19,20-pentahydroxy-3-(1-hydroxy-2-methylpropylidene)-7,12,15,17-tetramethyl-4-oxo-5,11,13,21-tetraoxaheptacyclo[10.8.1.114,17.01,10.02,7.010,15.014,19]docos-16-yl]acetic acid (1)
Cyclohexasiloxane, dodecamethyl- (1)
Cyclopentasiloxane, decamethyl- (1)
NCGC00347651-02_C20H26O3_1-Phenanthrenecarboxylic acid, 1,2,3,4,4a,9,10,10a-octahydro-1,4a-dimethyl-7-(1-methylethyl)-9-oxo- (1)
Triphenyl phosphate (TPP)|Triphenyl phosphate|Triphenoxyphosphine oxide (1)
Glycohyodeoxycholic acid|SCHEMBL1654508|2-[4-(3,6-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoylamino]acetic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
Cyclotetrasiloxane, octamethyl- (1)
2-((4R)-4-((3R,5S,7R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
Lauramidopropyl betaine|3-(Dodecanoylamino)propyl(carboxymethyl)dimethylammonium|carboxymethyl-[3-(dodecanoylamino)propyl]-dimethylazanium (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)

IsPrivate

False (1)

First Public Date

2014 (60)
2025 (50)
2021 (49)
2024 (48)
2020 (36)
2023 (35)
2022 (32)
2019 (27)
2018 (24)
2026 (23)
2015 (17)
2017 (16)
2013 (15)
2016 (9)

Classification

bacteria (3)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (111)
RNA-seq of coding RNA (21)
Animal - High-throughput sequencing (6)
Unknown experiment type (4)
ATAC-seq (2)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
Cell line - One-color microarray (1)
DNA-seq (1)

Release Date

2021 (96)
2022 (94)
2025 (73)
2019 (73)
2023 (65)
2020 (62)
2024 (61)
2017 (55)
2018 (53)
2016 (53)
2015 (44)
2014 (44)
2013 (40)
2010 (39)
2011 (38)
2012 (32)
2008 (20)
2026 (15)
2009 (13)
2007 (10)
2005 (8)
2006 (3)
2004 (3)
2002 (2)
1998 (1)

Lab affiliation

Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Facility manager, Senior research fellow (2)
Faculty of Biosciences and Aquaculture, Nord University, Bodø, Norway (2)
Proteomics facility manager (2)
Marine and Freshwater Research Centre, Galway Mayo Institute of Technology, Dublin Road, Galway, Ireland, H91 TRNW (1)
Department of Animal and Aquaculture Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Arboretveien 6, Ås, Norway. (1)
Department of Biopharmaceutical & Medical Science,School of Science & Computing,Galway Mayo Institute of Technology, Dublin Rd, Galway, Ireland (1)
School of Earth and Environmental Sciences, The University of Manchester (1)
The Protein Engineering and Proteomics Group (PEP), Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Norway (1)
University of Jyväskylä Department of Biological and Environmental Science (1)
UR1037 – Laboratoire de Physiologie et Génomique des Poissons (LPGP), INRAE, France (1)
Marine and Freshwater Research Centre Atlantic Technological University, Galway City Campus Ireland (1)
Central Science Laboratory, University of Tasmania (1)
Department of Gamete and Embryo Biology (1)
Facility manager (proteomics mass spectrometry), Senior research fellow (1)
Laboratory of Animal Physiology, Department of Biology, FI-20014 University of Turku, Finland (1)
proteogenomics laboratory (1)
BioArCh, Department of Archaeology, University of York, United Kingdom (1)
Department of Biology (1)
J. Forja Dpt. Physical Chemistry CACYTMAR Campus de Excelencia Internacional del Mar University of Cadiz (Spain) (1)
School of Pharmacy, University of Oslo, Norway (1)
Section for Geobiology, Globe Institute, University of Copenhagen, Copenhagen, Denmark. McDonald Institute for Archaeological Research, University of Cambridge, UK. (1)
National Research Institute of Police Science (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences, 1432, Ås Norway (1)
Proteomics facility, Central Science Laboratory, University of Tasmania, Australia (1)
Faculty of Chemistry, Biotechnology and Food Science. Norwegian University of Life Sciences. (1)
Institute of Aquaculture, University of Stirling (1)
Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway (1)
Department of Animal Sciences, Faculty of BIOVIT, Norwegian University of Life Sciences, Ås, Norway (1)

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Global gene expresssion profiling the gills of amoebic gill disease (AGD) affected Atlantic salmon (Salmo salar)

Amoebic gill disease (AGD) is an ectoparasitic condition of some farm-reared marine fish and is caused by Neoparamoeba perurans. Tanks housing Atlantic salmon (Salmo salar) were inoculated with Neoparamoeba perurans and fish were sampled at 36 days postinoculation (pi.). AGD-affected gill tissue was...

ORGANISM(S): Salmo salar

2010-05-25 | E-GEOD-9595 | biostudies-arrayexpress

The farmed Atlantic salmon (Salmo salar) skin-mucus proteome

Norway is the largest producer and exporter of farmed Atlantic salmon (Salmo salar) worldwide. Skin disorders correlated with bacterial infections represent an important challenge for fish farmers due to the economic losses caused. Little is known about this topic, thus studying the skin-mucus of Sa...

ORGANISM(S): Salmo salar (Atlantic salmon)

2019-07-15 | PXD008838 | Pride

Inflammatory response in primary muscle cell cultures in Atlantic salmon (Salmo salar)

This experiment was aimed at understanding the transcriptomic response of primary muscle cell cultures to 24h rIL-1beta stimulation

ORGANISM(S): Salmo salar

2013-12-04 | E-MTAB-1692 | biostudies-arrayexpress

Transcriptional response of Atlantic salmon (Salmo salar) to fish oil vs vegetable oil based diets

The effect of different diets (i.e. fish oil based vs vegetable oil based) on liver transcription profiles over the life history stages (freshwater and marine phases) of cultured Atlantic salmon (Salmo salar) were explored. Two groups of fish were raised from first feeding on different lipid contai...

ORGANISM(S): Salmo salar

2008-08-01 | E-TABM-449 | biostudies-arrayexpress

Salmo salar

Salmo salar Transcriptome

PRJNA680991 | ENA

Salmo salar

Salmo salar: Freeze substitution

PRJNA292635 | ENA

Transcriptomic and physiological responses to fishmeal substitution with plant proteins in formulated feed in farmed Atlantic salmon (Salmo salar)

This experiment was aimed at understanding transcriptional response to a plant protein diet in multiple tissues of Atlantic salmon. Agilent-based microarray platform with 4 x 44 K probes per slide (Salar_2; Agilent Design ID:025520) oligo microarray was used in this experiment. A dual-labelled exper...

ORGANISM(S): Salmo salar

2012-06-01 | E-TABM-1207 | biostudies-arrayexpress

Salmo salar

Salmo salar: Liver slice culture

PRJNA288080 | ENA

Salmo salar

Salmo salar Raw sequence reads

PRJNA1072556 | ENA

Salmo salar

Co-infected Salmo salar Transcriptome

PRJNA631494 | ENA

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