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TranscriptomicsComparative transcriptome analysis of Saccharomyces cerevisiae wild type and M-NM-^Tasc1 strain
Asc1p and its essential orthologues in higher eukaryotes, as e.g. RACK1 in mammals, are involved in several distinct cellular signaling processes, but the implications of a total deletion have never been assessed in a comprehensive genome-wide manner. This study reveals the major cellular processes ...
ORGANISM(S): Saccharomyces cerevisiae 
2012-11-30 | E-GEOD-34286 | biostudies-arrayexpress
UnknownParainfluenza virus 5 m protein interaction with host protein 14-3-3 negatively affects virus particle formation.
Not available
S-EPMC3067794 | biostudies-literature
UnknownThe C-terminal end of parainfluenza virus 5 NP protein is important for virus-like particle production and M-NP protein interaction.
Not available
S-EPMC3004301 | biostudies-literature
ProteomicsQuantitative Rps2 BioID to monitor Asc1-dependent rearrangement at the head region of the 40S ribosome
In a previous study we applied a quantitative proximity-labeling technique called Biotin Identification (BioID, Roux et al., 2012) to analyze the microenvironment of the Gβ-like scaffold protein Asc1 (Opitz et al., 2017). The WD40-repeat protein Asc1 binds to the head region of the small 40S ribosom...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2019-11-07 | PXD015611 | Pride
Asc1 Bre5 Sro9 Bioid Def1 Stm1 Rps2 Silac Ribosome Rps3 Translation Ubp3 Saccharomyces cerevisiae Vps30 
ProteomicsVerticillium dahliae Frq and Frh form a Frq-Frh complex in dependence on arginine 806 (R806) of Frh
The plant pathogenic fungus Verticillium dahliae has homologs of the clock genes [Cascant-Lopez et al., 2020], which are well described in Neurospora crassa [Diernfellner et al., 2020]. In N. crassa, frequency (Frq) and the Frq-interacting RNA helicase (Frh) interact and form the Frq-Frh complex [Ch...
ORGANISM(S): Verticillium dahliae JR2 
2023-07-12 | PXD041716 | Pride
Frh Clock proteins Frq-interacting rna helicase Frq Verticillium dahliae jr2 Frequency 
TranscriptomicsDynamic regulation of microRNA expression following Interferon-gamma-induced gene transcription
MicroRNAs are major regulators of post-transcriptional gene regulation. Even small changes in miRNA levels may have profound consequences for the expression levels of target genes. Hence, miRNAs themselves need to be tightly, albeit dynamically, regulated. Here, we investigated the dynamic behaviour...
ORGANISM(S): Homo sapiens 
2012-08-24 | E-MEXP-3544 | biostudies-arrayexpress
ModelsIbrahim2008_Cdc20_Sequestring_Template_Model
Biophysical Chemistry 134 (2008) 93-100 Mad2 binding is not sufficient for complete Cdc20 sequestering in mitotic transition control (an in silico study) Bashar Ibrahim, Peter Dittrich, Stephan Diekmann, Eberhard Schmitt This mode...
2024-09-02 | BIOMD0000000194 | BioModels
ProteomicsSplit-TurboID with Bre5 and Rps2 in Saccharomyces cerevisiae
The in vivo labeling technique Split-Biotin identification (Split-BioID, De Munter et al., 2017, Schopp et al., 2017, Cho et al., 2020) was used to capture the common microenvironment of Bre5 and the ribosomal protein Rps2 (uS5). Biotinylated proteins were enriched from cell lysates using affinity p...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2021-11-10 | PXD028879 | Pride
Split-turboid Rps2 Split-bioid Us5 Silac Saccharomyces cerevisiae Ribosome Bre5 
TranscriptomicsExpression data from rho+ and rho0 budding yeast celles harvetsed from complete medium with 2% glucose before or after shifting to complete medium without glucose
This experiment compares mRNA expression in cells with and without mitochondrial DNA (M-OM-^A+ and M-OM-^A0 cells respectively). We used global RNA profiling to measure mRNA expression in M-OM-^A+ and M-OM-^A0 cells harvested at log phase from synthetic medium with glucose (CM + 2% glucose, "CM...
ORGANISM(S): Saccharomyces cerevisiae 
2013-12-31 | E-GEOD-49002 | biostudies-arrayexpress
GenomicsGenome-wide Analysis of Chromatin Interactions in Human Cells
Millions of cis-regulatory sequences have recently been found in the human genome, but the function of most cis-elements are not yet clear, in part due to the difficulty in determining their regulatory targets, which are often located millions of base pairs away and separated by one or more unrelate...
ORGANISM(S): Homo sapiens 
2013-10-20 | E-GEOD-43070 | biostudies-arrayexpress
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