Schneider Kirsten K

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Transcriptomics (14)
Unknown (2)
Metabolomics (1)
Proteomics (1)

Organisms

Mus musculus (5)
Homo sapiens (4)
Rattus norvegicus (2)
Drosophila melanogaster (2)
Solanum lycopersicum (1)
Corynebacterium glutamicum ATCC 13032 (1)

Repository

biostudies-arrayexpress (14)
MetaboLights (1)
pride (1)

Technology Type

Mass spectrometry assay (1)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2015 (5)
2010 (3)
2026 (2)
2014 (2)
2013 (1)
2009 (1)
2008 (1)
2020 (1)

CHEBI ID

CHEBI:1127735 (1)
CHEBI:127762 (1)
CHEBI:134216 (1)
CHEBI:1427 (1)
CHEBI:15354 (1)
CHEBI:15355 (1)
CHEBI:15366 (1)
CHEBI:15428 (1)
CHEBI:15603 (1)
CHEBI:15727 (1)
CHEBI:15728 (1)
CHEBI:15729 (1)
CHEBI:15741 (1)
CHEBI:15891 (1)
CHEBI:15908 (1)
CHEBI:15940 (1)
CHEBI:15971 (1)
CHEBI:16020 (1)
CHEBI:16135 (1)
CHEBI:16259 (1)
CHEBI:16347 (1)
CHEBI:16359 (1)
CHEBI:16411 (1)
CHEBI:16414 (1)
CHEBI:16437 (1)
CHEBI:16450 (1)
CHEBI:16467 (1)
CHEBI:16543 (1)
CHEBI:16704 (1)
CHEBI:16709 (1)

Metabolite Name

(+)-S,S-Ethambutol (1)
(+)-Thioctic acid (1)
(+)-yohimbine (1)
(+/-)-Camphoric acid (1)
(+/-)-Hesperetin (1)
(+/-)-Metanephrine (1)
(-)-Oxycodone (1)
(-)-Oxymorphone (1)
(-)-Shikimic acid (1)
(-)-secoisolariciresinol (1)
(12-Methyl-7-tetraphenyl)methyl hydrogen sulfate (1)
(2E)-3-(3,4-Dimethoxyphenyl)acrylic acid (1)
(2E)-3-(4-Hydroxy-3-methoxyphenyl)-N-(4-oxobutyl)acrylamide (1)
(2E)-3-Methyl-4-(sulfooxy)-2-butenoic acid (1)
(2E)-N-[2-(Dihydroxymethyl)-4-hydroxy-5-methoxyphenyl]-3-(4-hydroxy-3-methoxyphenyl)acrylamide (1)
(2R)-1-{[(2-Aminoethoxy)(hydroxy)phosphoryl]oxy}-3-hydroxy-2-propanyl (6Z,9Z,12Z,15Z)-6,9,12,15-octadecatetraenoate (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3,4-dihydro-2H-chromen-3-yl 4-hydroxybenzoate (1)
(2R,3S)-3-Hydroxy-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylic acid (1)
(2S)-3-(1H-Imidazol-4-yl)-2-({[(3S,4S,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)tetrahydro-2-furanyl]methyl}amino)propanoic acid (non-preferred name) (1)
(2S)-6-Amino-2-[(E)-(hydroxymethylene)amino]hexanimidic acid (1)
(2Z)-(2,6-Dihydroxy-3,4-dimethoxycyclohexylidene)acetonitrile (1)
(3S)-3-{[(2E)-3-Carboxy-2-propenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S)-3-{[(2E)-4-Carboxy-2-butenoyl]oxy}-4-(trimethylammonio)butanoate (1)
(3S,4S)-7,12-Dimethyl-3,4-dihydro-3,4-tetraphenediol (1)
(4-Ethoxyphenyl)urea (1)
(4E)-2-Amino-3-oxo-4-undecenoic acid (1)
(4R,5S,9S,10R,12S,13S)-1,5,9-Trimethyl-11,14,15,16-tetraoxatetracyclo[10.3.1.0~4,13~.0~8,13~]hexadecan-10-ol (1)
(4S)-4-[(2E,4Z)-2,4-Decadienoyloxy]-4-(trimethylammonio)butanoate (1)
(4beta,8alpha,9R)-6'-Methoxycinchonan-3,9-diol (1)
(5R,6Z,8E,10E,12S,14Z)-5,12,20,20,20-Pentahydroxy-6,8,10,14-icosatetraenoic acid (1)

Study type

Transcription profiling by array (11)
Other (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2015 (5)
2010 (3)
2014 (2)
2026 (1)
2013 (1)
2009 (1)
2008 (1)
2021 (1)
2018 (1)

Lab affiliation

Microbiology Department Ludwig-Maximilians-Universität München Biozentrum Department Biologie I, Ber. Mikrobiologie Großhaderner Str. 2-4 82152 Martinsried http://www.mikrobiologie.biologie.uni-muenchen.de/personen/kjung/jung_k/index.html (1)

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Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

Understanding transcriptional regulatory networks requires the identification and characterization of cis-regulatory modules (CRMs), DNA sequences which can direct expression of associated genes to a specific cell type and/or developmental stage. Reporter assays for the capacity of a candidate CRM ...

ORGANISM(S): Drosophila melanogaster

2013-07-13 | E-GEOD-41503 | biostudies-arrayexpress

miR-28 expression in the Burkitt lymphoma cell line P3HR1

Burkitt lymphoma (BL) is a highly aggressive B cell non-Hodgkin lymphoma (B-NHL), which originates from germinal center (GC) B cells and harbors translocations deregulating the MYC oncogene. A comparative analysis of microRNAs (miRNAs) expressed in normal and malignant GC B cells identified miR-28 a...

ORGANISM(S): Homo sapiens

2014-06-01 | E-GEOD-56268 | biostudies-arrayexpress

Sox4 links tumor suppression to accelerated aging in mice [Hair regeneration]

Sox4 is a transcription factor expressed during embryonic development and some adult tissues such as lymphoid organs, pancreas, intestine and skin. During embryogenesis, Sox4 regulates the survival of mesenchymal and neural progenitors, lymphocyte and myeloid differentiation, and pancreatic, bone an...

ORGANISM(S): Mus musculus

2015-05-20 | E-GEOD-58153 | biostudies-arrayexpress

Sox4 links tumor suppression to accelerated aging in mice [Telogen]

ORGANISM(S): Mus musculus

2015-05-20 | E-GEOD-58154 | biostudies-arrayexpress

Proteome analysis of Corynebacterium glutamicum ATCC13032 Δefp

Bacterial translational elongation factor P (EF-P) is required during translation of proteins containing consecutive proline motifs. Several transcription and translational regulators contain polyproline motifs and therefore, EF-P might also affect levels of proteins that do not contain polyproline ...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2020-04-06 | PXD014742 | Pride

Down-regulation of SFRP1 in a mammary epithelial cell line

Microarray data to accompany Gauger et al. (2009) Cancer Cell International paper A treated X untreated design was used whereby immortalized human mammary epithelial cell lines (TERT cells) were modified to stably express an siRNA that knocked down SFRP1 expression. These "treated" cells were label...

ORGANISM(S): Homo sapiens

2010-05-08 | E-GEOD-15948 | biostudies-arrayexpress

Habitual Coffee Intake Shapes the Gut Microbiome and Modifies Host Physiology and Cognition: double-blind, randomised, parallel design

Coffee influences multiple physiological processes, including gut function, stress, cognition, and the microbiome. However, the mechanisms underlying these effects remain poorly understood. In this study, we examined coffee’s impact on the microbiota–gut–brain axis—a bidirectional communication p...

2026-03-26 | MTBLS13401 | MetaboLights

Single-cell RNA-sequencing of murine colorectal cancer tumors

Murine adenocarcinoma models VAKPS (Villin1-CreER Apc-fl/+ Kras-G12D/+ Trp5-3fl/fl Smad4-fl/fl) and VKPN (Villin1-CreER Kras-G12D/+ Trp53-fl/fl Rosa26-N1icd/+) were injected into mice to grow into subcutaneous tumors. Tumors were profiled through multiplexed single-cell RNA-sequencing.

ORGANISM(S): Mus musculus

2026-04-01 | E-MTAB-16835 | biostudies-arrayexpress

miRNA profiling of normal mature B cells

miRNA profiling has been performed on normal mature B cells at different stages of differentiation (naive, germinal center and memory). The main goal is to identify miRNA signatures associated with differentiation stages of normal B cells. Keywords: miRNA, normal mature B cells Cells were isolated...

ORGANISM(S): Homo sapiens

2010-05-16 | E-GEOD-15144 | biostudies-arrayexpress

Influence of Fatty Acid Diets on Gene Expression in Rat Mammary Epithelial Cells

Background: This study examines the impact of dietary fatty acids on regulation of gene expression in the mammary epithelial cells before and during puberty. Methods: The diets primarily consisted of n-9 monounsaturated fatty acids (olive oil), n-6 polyunsaturated fatty acids (safflower), saturated ...

ORGANISM(S): Rattus norvegicus

2009-04-01 | E-GEOD-14933 | biostudies-arrayexpress

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