Scott M G MG - OmicsDI

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Unknown (732)
Transcriptomics (76)
Proteomics (51)
Genomics (23)
Metabolomics (11)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (56)
Mus musculus (24)
Rattus norvegicus (11)
Escherichia coli (8)
Saccharomyces cerevisiae (5)
Acinetobacter baumannii (3)
Burkholderia cenocepacia J2315 (3)
Scophthalmus maximus (2)
Saccharomyces cerevisiae SK1 (2)
Listeria monocytogenes (2)
Drosophila melanogaster (2)
Campylobacter jejuni (2)
Acinetobacter calcoaceticus/baumannii complex (2)
Bacteroides thetaiotaomicron (2)
Burkholderia cenocepacia (2)
Campylobacter fetus subsp. fetus (2)
Cryptosporidium parvum Iowa II (2)
Enchytraeus albidus (1)
Helicobacter pylori 26695 (1)
Roseburia inulinivorans DSM 16841 (1)
Penaeus monodon (1)
Leishmania mexicana (1)
Macaca fascicularis (1)
Apis mellifera (1)
Helicobacter pylori (1)
Pseudomonas aeruginosa (1)
Acinetobacter baumannii 44298_5 (1)
Bilophila wadsworthia 3_1_6 (1)
Burkholderia cenocepacia H111 (1)
Burkholderia dolosa AU0158 (1)

Repository

biostudies-arrayexpress (84)
pride (47)
EGA (17)
MetaboLights (10)
MassIVE (5)
GNPS (1)

Tissue

Cell culture (5)
Epithelial cell (4)
Colon (3)
Melanocyte (2)
Blood (1)
Blood plasma (1)
Brain (1)
Extensor digitorum longus (1)
Gastrocnemius (1)
Haploid cell (1)
Liver (1)
Microvascular endothelial cell (1)
Muscle fibre (1)
Neutrophil (1)
Pancreas (1)
Pancreatic islet beta cell (1)
Pancreatic islet cell (1)
Permanent cell line cell (1)
Plasma membrane (1)
Primary cell (1)
Spleen (1)
T cell (1)

Disease

Melanoma (2)
Hypertension (1)
Autosomal recessive limb-girdle muscular dystrophy type 2C (1)
Breast cancer (1)
Chronic myeloid leukemia (1)
Colitis (1)
Colon cancer (1)
Disease free (1)
Meningococcal meningitis (1)
Neurodevelopmental delay (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (35)
Mass spectrometry (10)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (4)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

NextSeq 500 (4)
5975C Series GC/MSD (Agilent) (3)
G2505B DNA microarray scanner (2)
Bruker maXis ESI Quadrupole TOF (2)
Q Exactive (2)
Ilumina HiScan H166 (1)
10X Genomics Chromium (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
Affymetrix Gene Titan (1)
Illumina iScan (1)
Gene Titan (1)
HP GeneArray [Affymetrix/HP] (1)
Scanning hardware (1)
Illumina NovaSeq 6000 (1)
LTQ (1)
LTQ Orbitrap Velos (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (negative mode) (1)
Agilent 6550 iFunnel Accurate-Mass UHPLC-QTOFMSMS (positive mode) (1)
Exactive (Thermo Scientific) (1)
GCMS-QP2010 Plus (Shimadzu) (1)
LECO Pegasus III, GCTOFMS (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Quattro Premier XE (Waters) (1)

Publication Date

2010 (17)
2024 (12)
2015 (11)
2013 (10)
2011 (10)
2025 (9)
2022 (7)
2021 (7)
2016 (7)
2008 (7)
2023 (7)
2020 (7)
2019 (6)
2018 (6)
2014 (6)
2007 (4)
2006 (4)
2012 (3)
2009 (2)
2026 (2)
2017 (2)
2004 (1)

CHEBI ID

CHEBI:17368 (8)
CHEBI:15428 (6)
CHEBI:16199 (6)
CHEBI:16335 (6)
CHEBI:17148 (6)
CHEBI:15603 (5)
CHEBI:16015 (5)
CHEBI:16643 (5)
CHEBI:16857 (5)
CHEBI:16958 (5)
CHEBI:16977 (5)
CHEBI:17115 (5)
CHEBI:17568 (5)
CHEBI:17712 (5)
CHEBI:17821 (5)
CHEBI:17895 (5)
CHEBI:30915 (5)
CHEBI:32816 (5)
CHEBI:7916 (5)
CHEBI:15729 (4)
CHEBI:15756 (4)
CHEBI:15760 (4)
CHEBI:15971 (4)
CHEBI:16414 (4)
CHEBI:16610 (4)
CHEBI:16704 (4)
CHEBI:16708 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:17191 (4)

Metabolite Name

Hypoxanthine (6)
Adenosine (5)
Glycine (5)
Putrescine (5)
Urea (5)
Creatinine (4)
Fructose (4)
Glycerol (4)
Inosine (4)
L-serine (4)
Spermidine (4)
Thymine (4)
Tyramine (4)
Uracil (4)
Xanthine (4)
Adenine (3)
Arginine (3)
Beta-alanine (3)
Cholesterol (3)
Citrulline (3)
Cytosine (3)
L-alanine (3)
L-cysteine (3)
L-glutamic acid (3)
L-histidine (3)
L-leucine (3)
L-ornithine (3)
L-threonine (3)
L-tyrosine (3)
L-valine (3)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (55)
ChIP-seq (6)
RNA-seq of coding RNA (6)
Comparative genomic hybridization by array (4)
ChIP-chip by tiling array (2)
CUT&RUN (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
RNAi profiling by array (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (100)
2022 (85)
2023 (79)
2024 (67)
2020 (59)
2025 (54)
2019 (48)
2015 (46)
2018 (44)
2016 (34)
2014 (34)
2013 (31)
2017 (28)
2011 (26)
2010 (25)
2012 (22)
2008 (14)
2009 (7)
2007 (4)
2006 (4)
2026 (4)
2004 (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (9)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia. (3)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (3)
Department of Chemistry and Biochemistry University of Colorado, Boulder Boulder, CO 80309 (2)
TDI Mass Spectrometry Laboratory, Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, Roosevelt Drive, Oxford OX3 7FZ, UK (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Department for Systems Biology, Institut de recherches cliniques de Montréal (IRCM), Montréal, QC, Canada Département de biochimie et médecine moléculaire, Universitéde Montréal, Montréal, QC, Canada Division of Experimental Medicine, McGill University, Montreal, QC, Canada (1)
Department of Anatomy, Physiology, and Pharmacology, University of Saskatchewan, Saskatoon, Saskatchewan, Canada (1)
Department of Biochemistry and Pharamcology Bio21 Institute, University of Melbourne (1)
Department of Biochemistry and Pharmacology, Bio21 Institute, University of Melbourne (1)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, Australia. (1)
Department of Biology, University of Konstanz, Germany (1)
Department of Medicine, University of Cambridge, Cambridge, UK (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia. (1)
Department of Molecular Microbiology, Washington University School of Medicine in St. Louis, St. Louis, MO, USA (1)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, Missouri, United States of America (1)
Department of Psychiatry, Yale University School of Medicine, New Haven, CT (1)
Department of Radiology, Division of Cell Biology & Imaging, University of Massachusetts Medical School, Worcester, MA, USA (1)
Departments of Genetics and Biochemistry, Geisel School of Medicine at Dartmouth, Lebanon, New Hampshire, USA (1)
Discovery Proteomics University of Oxford Target Discovery Institute (1)
Division of Metabolism, Endocriology & Diabetes and Department of Internal Medicine, University of Michigan, Ann Arbor, MI, 48105, USA. (1)
INSTITUT COCHIN Inserm U1016, CNRS UMR 8104, Université Paris Dsecartes, Sorbonne Paris Cité, France (1)
Marshall Centre for Infectious Disease Research and Training, School of Biomedical Sciences, The University of Western Australia, Nedlands, Western Australia, 6009, Australia (1)
National Heart, Lung, and Blood Institute, Lipoprotein Metabolism Section (1)
Research and Innovation Centre, University of Regina, SK S4S OA2, Canada (1)
The University of Melbourne (1)

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Transcription profiling of mouse mammary gland side population cells (MG-SPs) to identify differentially expressed genes.

Similar to the bone marrow, the mammary gland contains a distinct population of Hoechst-effluxing side population cells, MG-SPs. To better characterize MG-SPs, their microarray gene profiles were compared to the remaining cells, which retain Hoechst dye (MG-NSPs). For analysis, gene ontology (GO) t...

ORGANISM(S): Mus musculus

2007-11-27 | E-GEOD-5309 | biostudies-arrayexpress

Transcription profiling of Drosophila developmental time series

Michelle N. Arbeitman, Eileen E. M. Furlong, Farhad Imam, Eric Johnson, Brian H. Null, Bruce S. Baker, Mark A. Krasnow, Matthew P. Scott, Ronald W. Davis and Kevin P. White. Gene Expression During the Life Cycle of Drosophila melanogaster, Science, 297: 2270-2275, 2002. This work can be accessed fro...

ORGANISM(S): Drosophila melanogaster

2004-11-06 | E-FLYC-6 | biostudies-arrayexpress

Pharmacognostic Evaluation, Chemical Characterization, and Antibacterial Activity of Bassia indica (Wight) A.J. Scott.

Not available

S-EPMC11244141 | biostudies-literature

Mechanisms of response to silver nanoparticles Enchytraeus albidus (Oligochaeta): survival, reproduction and gene expression profile

Due to its antimicrobial activity, silver nanoparticles (Ag-NPs) are among the most used NPs worldwide, yet little information is available regarding their effects, particularly in soil dwelling organisms. Enchytraeids (Oligochaeta) are important members of the soil fauna which actively contribute t...

ORGANISM(S): Enchytraeus albidus

2013-05-22 | E-GEOD-42431 | biostudies-arrayexpress

Transcription profiling of human monocytes after treatment vehicle, isotype control antibody, TREM1 antibody, LPS, isotype control antibody plus LPS and TREM1 antibody plus LP to invesigate innate immune responses to TREM-1 activation

TREM-1 is an orphan immunoreceptor expressed on monocytes, macrophages, and neutrophils. TREM-1 associates with and signals via the adapter protein DAP12/TYROBP, which contains an immunoreceptor tyrosine-based activation motif (ITAM). TREM-1 activation by receptor cross-linking is pro-inflammatory, ...

ORGANISM(S): Homo sapiens

2008-04-05 | E-GEOD-9988 | biostudies-arrayexpress

Transcription profiling of rat heart from a spontaneously hypertensive strain treated with doxorubicin or dexrazoxane and then doxorubicin

This study was initiated to characterize early DOX-induced changes in cardiac gene expression in order to identify potential additional areas for clinical intervention. Male spontaneously hypertensive rats (SHR) received 3 mg/kg DOX or vehicle (iv) 30 minutes following pretreatment with 50 mg/kg DZ...

ORGANISM(S): Rattus norvegicus

2009-06-01 | E-MEXP-2071 | biostudies-arrayexpress

Effect of Rosuvastatin on the Lipoprotein Proteome

Statins lower plasma cholesterol by as much as 50%, thus reducing future cardiovascular events. However, the physiological effects of statins are diverse and not all are related to LDL-C lowering. We performed a small clinical pilot study to assess the impact of statins on lipoprotein-associated pro...

ORGANISM(S): Homo sapiens (Human)

2018-10-24 | PXD002633 | Pride

Soilless Cultivated Halophyte Plants: Volatile, Nutritional, Phytochemical, and Biological Differences.

Not available

S-EPMC10295272 | biostudies-literature

Bacillus Calmette-Guerin vaccination as defense against SARS-CoV-2 (BADAS): a randomized controlled trial to protect healthcare workers in the USA by enhanced trained immune responses.

Not available

S-EPMC10548680 | biostudies-literature

Physiology and genetic activity of Listeria monocytogenes during multi-hurdle stress induced cell death

The physiological basis of the hypothesis that temperature is the primary governing factor of bacterial cell inactivation under otherwise non-growth permissive conditions was investigated. Application of simultaneous low pH (pH 3.5) and low water activity (aw = 0.9; 2.5 M NaCl) conditions, applied t...

ORGANISM(S): Listeria monocytogenes

2010-06-20 | E-GEOD-18796 | biostudies-arrayexpress

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