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Unknown
(502)
Genomics
(240)
Transcriptomics
(102)
Proteomics
(18)
Metabolomics
(7)
Organisms
Saccharomyces cerevisiae
(24)
Homo sapiens
(9)
Streptomyces coelicolor
(9)
Mycobacterium tuberculosis
(6)
Rattus norvegicus
(4)
Cricetulus griseus
(4)
Escherichia coli
(4)
Corynebacterium glutamicum ATCC 13032
(3)
Mus musculus
(3)
Aspergillus niger
(3)
Saccharopolyspora erythraea
(2)
Streptomyces venezuelae
(2)
Aedes aegypti
(2)
Streptococcus pneumoniae
(2)
Escherichia coli K-12
(2)
Actinoplanes sp. SE50/110
(2)
Arabidopsis thaliana
(2)
Kluyveromyces lactis
(2)
Amycolatopsis mediterranei S699
(1)
Trichoderma reesei QM9414
(1)
Lactococcus lactis
(1)
Aspergillus oryzae RIB40
(1)
Leishmania major
(1)
Leishmania mexicana
(1)
Bacillus subtilis subsp. subtilis str. 168
(1)
Haemophilus influenzae
(1)
Acidithiobacillus ferrooxidans
(1)
Schizosaccharomyces pombe
(1)
Rattus rattus
(1)
Bordetella pertussis
(1)
Organisms
Aspergillus niger
(43)
Pseudomonas putida KT2440
(36)
Taxus x media
(28)
Saccharomyces cerevisiae
(6)
Spathaspora passalidarum NRRL Y-27907
(4)
Scheffersomyces coipomensis
(4)
Novosphingobium aromaticivorans DSM 12444
(4)
Scheffersomyces xylosifermentans
(4)
Streptomyces coelicolor
(3)
Aspergillus trinidadensis
(2)
Aspergillus siamensis
(2)
Aspergillus creber
(2)
Aspergillus templicola
(2)
Aspergillus transcarpathicus
(2)
Aspergillus nutans
(2)
Aspergillus luppiae
(2)
Aspergillus pachycristatus
(2)
Aspergillus baeticus
(2)
Aspergillus austroafricanus
(2)
Aspergillus ruber
(2)
Aspergillus aurantiopurpureus
(2)
Aspergillus dimorphicus
(2)
Aspergillus inflatus
(2)
Aspergillus polyporicola
(2)
Aspergillus montevidensis
(2)
Aspergillus neocarnoyi
(2)
Aspergillus subalbidus
(2)
Aspergillus violaceus
(2)
Aspergillus jensenii
(2)
Scheffersomyces amazonensis
(2)
Repository
ENA
(240)
biostudies-arrayexpress
(91)
pride
(16)
geo
(12)
MetaboLights
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Tissue
Cell culture
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Leaf
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(1)
Yeast
(1)
Disease
Normal
(4)
Uninfected
(1)
Dengue 2 (JAM1409) infected
(1)
Primary tumor
(1)
Patients with LF syndrome and SOS of stage II active disease
(1)
Technology Type
Mass Spectrometry
(16)
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(11)
Mass spectrometry
(7)
Bottom-up proteomics
(3)
Data-dependent acquisition
(2)
SWATH MS
(2)
Instrument Platform
NextSeq 500
(3)
Nanodrop N1000 spectrophotometer
(2)
GenePix Professional 4200A [Axon Instruments]
(2)
Liquid Chromatography MS - positive - reverse phase
(2)
Biotech Photometer
(1)
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(1)
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(1)
Axon- GenePix4000B
(1)
418 [Affymetrix]
(1)
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(1)
MinION
(1)
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(1)
Illumina HiSeq 1500
(1)
Agilent 5975 GC-MS
(1)
ISQ LT (Thermo)
(1)
Pagasus 4D GC-MS (LECO)
(1)
Gas Chromatography MS -
(1)
Gas Chromatography MS - Positive (GC-MS (Positive))
(1)
Liquid Chromatography MS - alternating - reverse phase
(1)
Liquid Chromatography MS - negative - reverse phase
(1)
Publication Date
2011
(15)
2008
(14)
2005
(12)
2009
(11)
2010
(9)
2020
(6)
2014
(6)
2007
(6)
2006
(6)
2024
(5)
2013
(5)
2023
(5)
2026
(4)
2019
(4)
2015
(4)
2022
(3)
2016
(3)
2012
(3)
2025
(2)
2021
(2)
2017
(1)
2004
(1)
2018
(1)
CHEBI ID
CHEBI:15428
(4)
CHEBI:28875
(3)
CHEBI:28842
(3)
CHEBI:17754
(3)
CHEBI:6650
(3)
CHEBI:16196
(3)
CHEBI:18183
(3)
CHEBI:15756
(3)
CHEBI:17351
(3)
CHEBI:17327
(2)
CHEBI:22470
(2)
CHEBI:15584
(2)
CHEBI:30805
(2)
CHEBI:29019
(2)
CHEBI:17822
(2)
CHEBI:18257
(2)
CHEBI:15729
(2)
CHEBI:16977
(2)
CHEBI:17148
(2)
CHEBI:15741
(2)
CHEBI:1148
(2)
CHEBI:17115
(2)
CHEBI:18019
(2)
CHEBI:17203
(2)
CHEBI:17084
(2)
CHEBI:18050
(2)
CHEBI:15971
(2)
CHEBI:17306
(2)
CHEBI:16995
(2)
CHEBI:16857
(2)
Metabolite Name
Phytol
(2)
Tetradecanoic acid
(2)
Glycine
(2)
Glycine
(2)
Glycerol
(2)
Succinic acid
(2)
Fumaric acid
(2)
Valine
(2)
Alpha-Tocopherol
(2)
Alanine
(2)
(ii) Ergosta-4,6,22-triene or Ergosta-5,22-dien-3-ol (acetate)
(1)
(ii) Hydrocarbon
(1)
(ii)(i) Disaccharide
(1)
(i) Maltotriose (Meox 11TMS)
(1)
(i) Galactosylglycerol or Glucopyranose
(1)
(ii) Octadeca(di)enal
(1)
(ii)(i) Hydrocarbon
(1)
(i) 6,9,12-Octadecatrienoic acid (Me) or 7,10,13-Hexadecatrienal
(1)
(i) Glucopyranose or Galactinol (9TMS)
(1)
(ii)(i) 2-C16:0-Glycerol (2TMS)
(1)
(i) (Di-)Galactosylglycerol
(1)
(ii) Hexitol or Monosaccharide (Meox 6TMS)
(1)
(ii) Adenine (N7- 2TMS)
(1)
(i) Hexose (TMS)
(1)
(i) Tricyclo[8.6.0.0(2,9)]hexadeca-3,15-diene or (i) C22:6 (Me or TMS)
(1)
(ii) 7,10-C16:2-enal
(1)
(ii) Hexonic acid
(1)
(ii) Hexonic acid or Pentonic acid
(1)
(ii) Glycerol pattern + m/z 285, 333, 375
(1)
(ii) Threitol
(1)
First Public Date
2019
(92)
2020
(53)
2025
(45)
2024
(24)
2014
(12)
2023
(4)
2021
(3)
2018
(3)
2015
(2)
2026
(1)
2016
(1)
Classification
fungi
(125)
bacteria
(3)
Study type
Transcription profiling by array
(71)
RNA-seq of coding RNA
(6)
Unknown experiment type
(4)
Comparative genomic hybridization by array
(2)
ChIP-chip by tiling array
(1)
High-throughput sequencing
(1)
Cell line - High-throughput sequencing
(1)
Transcription profiling by tiling array
(1)
ChIP-chip by array
(1)
Methylation profiling by array
(1)
RNA-seq of non coding RNA
(1)
Release Date
2022
(58)
2024
(57)
2025
(54)
2023
(48)
2021
(48)
2020
(47)
2019
(38)
2018
(32)
2017
(30)
2016
(21)
2011
(21)
2015
(17)
2008
(16)
2026
(15)
2014
(15)
2013
(14)
2009
(13)
2010
(12)
2005
(10)
2012
(8)
2007
(8)
2006
(7)
2003
(2)
2004
(1)
1998
(1)
Lab affiliation
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland.
(2)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany
(1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences
(1)
Department of Bioprocess Engineering (150k), Institute of Food Science and Biotechnology (150), University of Hohenheim, Fruwirthstr. 12, 70599 Stuttgart, Germany
(1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany
(1)
Department of Microbial Proteomics, University of Greifswald, 17489 Greifswald, Germany
(1)
Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1
(1)
Institute of Bio- and Geosciences IBG-1: Biotechnology Forschungszentrum Jülich GmbH 52425 Jülich Germany
(1)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland
(1)
Jiangsu Academy of Agricultural Sciences
(1)
MIB, Univesitry of Manchester
(1)
Marten Lab Chemical, Biochemical, and Environmental Engineering University of Maryland Baltimore County Baltimore, MD 21250
(1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany
(1)
University of Guelph
(1)
University of Guelph, Molecular and Cellular Biology Department, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1
(1)
Tags
pathogen
(128)
pathogen:fungus
(125)
xref:PubMed:15256208
(3)
pathogen:bacterium
(3)
xref:PubMed:26457194
(1)
xref:PubMed:20632327
(1)
xref:PubMed:28955445
(1)
xref:PubMed:38229303
(1)
xref:PubMed:18174152
(1)
xref:PubMed:27150814
(1)
xref:PubMed:27035918
(1)
xref:PubMed:34751669
(1)
xref:PubMed:23651948
(1)
xref:PubMed:23170974
(1)
xref:PubMed:19173729
(1)
xref:PubMed:38397385
(1)
xref:PubMed:18524923
(1)
xref:PubMed:24792495
(1)
xref:PubMed:24912400
(1)
xref:PubMed:26271614
(1)
xref:PubMed:22018139
(1)
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Workflow for shake flask and plate cultivations with fats for polyhydroxyalkanoate bioproduction.
Not available
S-EPMC10313549
|
biostudies-literature
Cite
Predictive Monitoring of Shake Flask Cultures with Online Estimated Growth Models.
Not available
S-EPMC8614854
|
biostudies-literature
Cite
Systematic evaluation of characteristics of the membrane-based fed-batch shake flask.
Not available
S-EPMC5514527
|
biostudies-literature
Cite
Quantification and modeling of macroparticle-induced mechanical stress for varying shake flask cultivation conditions.
Not available
S-EPMC10507416
|
biostudies-literature
Cite
Antifoam addition to shake flask cultures of recombinant Pichia pastoris increases yield.
Not available
S-EPMC3072307
|
biostudies-literature
Cite
Analysis of the influence of flame sterilization included in sampling operations on shake-flask cultures of microorganisms.
Not available
S-EPMC7326993
|
biostudies-literature
Cite
Parallel substrate supply and pH stabilization for optimal screening of E. coli with the membrane-based fed-batch shake flask.
Not available
S-EPMC5941677
|
biostudies-literature
Cite
Simultaneous online monitoring of viscosity and oxygen transfer rate in shake flask cultures.
Not available
S-EPMC12374283
|
biostudies-literature
Cite
Shake flask methodology for assessing the influence of the maximum oxygen transfer capacity on 2,3-butanediol production.
Not available
S-EPMC6498610
|
biostudies-literature
Cite
Enhanced biosynthesis of withanolides by elicitation and precursor feeding in cell suspension culture of Withania somnifera (L.) Dunal in shake-flask culture and bioreactor.
Not available
S-EPMC4121209
|
biostudies-literature
Cite
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