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ProteomicsContribution of ShkA dysregulation to the cdG0 phenotype
The ShkA-ShpA-TacA phosphorelay regulates stalk biogenesis and G1-S phase transition in Caulobacter crescentus. Histidine kinase activity of ShkA is c-di-GMP dependent and a strain lacking c-di-GMP (cdG0) shows a number of phenotypic aberrations. In this project, we aim at disentangling the contribu...
ORGANISM(S): Caulobacter sp. 736 
2019-12-16 | PXD012739 | Pride
C. cresentus Oribtrap Shka Esi Lfq 
UnknownPrecise timing of transcription by c-di-GMP coordinates cell cycle and morphogenesis in Caulobacter.
Not available
S-EPMC7010744 | biostudies-literature
UnknownHybrid histidine kinase activation by cyclic di-GMP-mediated domain liberation.
Not available
S-EPMC6969517 | biostudies-literature
UnknownSAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization.
Not available
S-EPMC3810855 | biostudies-literature
UnknownTranscriptome and Metabonomics Analysis Revealed the Molecular Mechanism of Differential Metabolite Production of Dendrobium nobile Under Different Epiphytic Patterns.
Not available
S-EPMC9152433 | biostudies-literature
UnknownTranscriptome and WGCNA reveal hub genes in sugarcane tiller seedlings in response to drought stress.
Not available
S-EPMC10406934 | biostudies-literature
TranscriptomicsSTRT RNAseq of pluripotent stem cells reprogrammed with CRISPRa
Transcriptome comparison of CRISPRa induced human pluripotent stem cell lines, control iPSC line induced with Sendai viral vectors, H9 embryonic stem cell line and human foreskin fibroblasts.
ORGANISM(S): Homo sapiens 
2018-06-07 | E-MTAB-6185 | biostudies-arrayexpress
TranscriptomicsSTRT RNAseq of THP-1 monocytic cells exposed to surface modified-gold nanoparticles
Transcriptome comparison to assess the responses of human monocytic cells (THP-1) to gold-nanoparticles (Au-NPs) of two different diameter sizes (5 or 20 nm) with different surface functional groups, i.e., alkylammonium bromide, alkyl sodium carboxylate, or poly(ethylene glycol) (PEG)-terminated thi...
ORGANISM(S): Homo sapiens 
2019-06-04 | E-MTAB-7093 | biostudies-arrayexpress
TranscriptomicsSTRT RNAseq of human foreskin fibroblasts undergoing CRISPRa reprogramming
Comparison of human foreskin fibroblasts with different guide RNA compositions undergoing CRISPRa-mediated reprogramming. Cell samples have been collected at days 4, 8 and 12 of pluripotency induction. Each time point has three conditions with either (1) pluripotent reprogramming factor promoter tar...
ORGANISM(S): Homo sapiens 
2018-06-07 | E-MTAB-6186 | biostudies-arrayexpress
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