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ProteomicsTranslationalLandscape_HumanHeart
Here, we analyze the expression of predicted microproteins in human heart tissue and iPSC cardiomyocytes, using shot-gun proteomics and SRM. 4 identified candidates were functionally validated by interactome studies using AP-MS (affinity purification coupled to mass spectrometry). In addition, the i...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2019-06-04 | PXD012593 | Pride
Shot gun Heart tissue Targeted proteomics 
ProteomicsShot-gun proteomic analysis of S Cerevisiae, Candidatus Accumulibacter and Clostridium sacch.
Shot-gun whole cell lysate proteomics data from pure and enriched microbes were de-novo sequenced using PEAKS de Novo. The obtained peptide sequence lists serves as a test data for the peptide-centric taxonomy database Unipept.
ORGANISM(S): Clostridium saccharoperbutylacetonicum Candidatus Accumulibacter Saccharomyces cerevisiae (Baker's yeast) 
2021-03-15 | PXD016992 | Pride
Microbial cells Shot-gun proteomics 
ProteomicsInvestigating the autotrophic and mixotrophic metabolism of an anammox bacterium
Anaerobic ammonium oxidizing (anammox) bacteria mediate a key step in the biogeochemical nitrogen cycle and have been applied worldwide for the energy-efficient removal of nitrogen from wastewater. However, outside their core energy metabolism, little is known about the metabolic networks driving an...
ORGANISM(S): Candidatus Kuenenia stuttgartiensis 
2021-07-30 | PXD016171 | Pride
Metabolism Anammox Shot-gun proteomics Microbial proteomics 
ProteomicsProfiling of the proteome of peripheral blood mononuclear cells of subjects diagnosed with primary open angle glaucoma
This study reports the first characterization of the intracellular proteome of peripheral blood mononuclear cells (PBMC) isolated from subjects diagnosed with primary open angle glaucoma (POAG)by shot-gun proteomics. Glaucoma is a chronic optic neuropathy and among the first causes of irreversible...
ORGANISM(S): Homo sapiens (Human) 
2025-09-22 | PXD059976 | Pride
Glaucoma Peripheral blood mononuclear cells Shot gun proteomics Immune system 
ProteomicsLarge-scale discovery proteomics - Nitrospira moscoviensis
A large-scale discovery proteomics experiment was performed on biomass of Nitrospira moscoviensis (Lab head, Dr. Sebastian Lücker, RU, NL). The soluble protein fraction was analysed following high pH reverse-phase peptide fractionation. The insoluble membrane fraction was solubilised by an optimised...
ORGANISM(S): Nitrospira moscoviensis 
2021-07-22 | PXD019583 | Pride
Qe plus Nitrospira moscoviensis Shot-gun proteomics 
TranscriptomicsLife on the edge: Functional genomic response of Ignicoccus hospitalis to cellular takeover by Nanoarchaeum equitans
Investigation of changes in global gene expression patterns as Ignicoccus hospitalis becomes increasingly populated by Nanoarchaeum equitans These microarray data are complemented by shot gun proteomics (see manuscript)
ORGANISM(S): Ignicoccus hospitalis KIN4/I Ignicoccus hospitalis 
2014-04-24 | GSE57033 | GEO
ProteomicsBarley seed malting analysis - Temporal analyses of barley malting stages using shot-gun proteomics
Quantitative comparison of proteomes generated during germination stages of Barley seeds
ORGANISM(S): Hordeum vulgare (Barley) 
2018-07-05 | PXD009103 | Pride
Barley Seed Germination Lc-ms/ms 
UnknownApplication of an improved proteomics method for abundant protein cleanup: molecular and genomic mechanisms study in plant defense.
Not available
S-EPMC3820953 | biostudies-literature
TranscriptomicsLife on the edge: Functional genomic response of Ignicoccus hospitalis to cellular takeover by Nanoarchaeum equitans
Investigation of changes in global gene expression patterns as Ignicoccus hospitalis becomes increasingly populated by Nanoarchaeum equitans These microarray data are complemented by shot gun proteomics (see manuscript) A total of 16 chips were used (each experimental sample was done in duplicate, t...
ORGANISM(S): Ignicoccus hospitalis KIN4/I 
2014-04-24 | E-GEOD-57033 | biostudies-arrayexpress
ProteomicsDesign and experimental evaluation of a minimal, innocuous watermarking strategy to distinguish near-identical DNA and RNA sequences
F. Boonekamp et al., (2019) describe an innocuous watermarking strategy for coding regions that enables the discrimination of DNA and mRNA by sequencing through a k-mer approach and facilitates selective editing of watermarked and non-watermarked sequences. Shot-gun proteomics (LFQ) was performed on...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2020-09-21 | PXD016914 | Pride
Yeast Lfq Proteomics 
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