Small Peter P - OmicsDI

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Transcriptomics (539)
Unknown (412)
Genomics (136)
Proteomics (54)
Metabolomics (26)
Genomic (5)
Models (3)
Other (1)

Organisms

Homo sapiens (397)
Mus musculus (152)
Rattus norvegicus (22)
Arabidopsis thaliana (18)
Escherichia coli (10)
Drosophila melanogaster (8)
Saccharomyces cerevisiae (8)
Sus scrofa (6)
Danio rerio (6)
Bos taurus (6)
Streptococcus pneumoniae (4)
Caenorhabditis elegans (4)
Papio hamadryas (3)
Zea mays (3)
Schizosaccharomyces pombe (3)
Funaria hygrometrica (2)
Leishmania major (2)
Apis mellifera (2)
Mycobacterium tuberculosis (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Arabidopsis (1)
Murinae (1)
Nitrobacter winogradskyi (1)
Perca flavescens (1)
Moraxella catarrhalis BBH18 (1)
Streptococcus pneumoniae R6 (1)
Laccaria bicolor S238N-H82 (1)
Pectobacterium carotovorum (1)
Pimephales promelas (1)
Geospiza magnirostris (1)

Organisms

Homo sapiens (2)
Bos taurus (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (564)
EGA (107)
MetaboLights (26)
pride (26)
MassIVE (22)
dbGaP (5)
ENA (4)
BioModels (3)
geo (2)
jPOST (2)
PanoramaPublic (2)
GPMDB (1)
iProX (1)
PAXDB (1)

Tissue

Brain (5)
Cell culture (5)
Epithelial cell (3)
Electrically active cell (2)
Photosynthetic cell (2)
Blood plasma (1)
Blood serum (1)
Leaf (1)
Ovarian surface epithelial cell (1)
Permanent cell line cell (1)
Saliva (1)
Seedling (1)
Venom (1)
Whole body (1)

Disease

Normal (4)
Porphyria NOS (2)
Breast cancer (2)
Non-small cell lung carcinoma (2)
Cytomegalovirus seropositive (1)
Mantle cell lymphoma (1)
Not applicable (1)
12 DAI with PepMV-EU isolate (1)
Myelolipoma (1)
Heterodera schachtii nematode infection (1)
Breast adenocarcinoma (1)
Temporal lobe epilepsy (1)
Prostate cancer (1)
Carcinoma (1)
Acute myeloid leukemia (1)
Not Available (1)
Depression (1)
Disease free (1)
Major depressive disorder (1)
Malignant neoplasm of ovary (1)
Mixed disorder as reaction to stress (1)
Uterine inflammatory disease (1)

Technology Type

Mass Spectrometry (26)
Mass spectrometry (22)
Shotgun proteomics (11)
Illumina HiSeq 2000 (10)
Bottom-up proteomics (8)
Mass spectrometry assay (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (3)
Gel-based experiment (3)
Illumina HiSeq 2500 (2)
RNA mass spectrometry (2)
SRM/MRM (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
Illumina MiSeq (1)
Life Tech - Solid (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (11)
Illumina HiSeq 4000 (8)
Q Exactive (8)
Q Exactive Plus (5)
Scanning hardware (4)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000 (4)
Q TRAP (4)
Genepix (3)
NextSeq 500 (3)
TimsTOF Pro (3)
GenePix 4000A [Axon Instruments] (2)
Illumina Genome Analyzer II (2)
LTQ Orbitrap (2)
Orbitrap Fusion (2)
Q Exactive HF (2)
GenePix 4000B Microarray Scanner (1)
SureScan Dx (1)
FS450 (1)
GCS3000 (1)
ScanArray [PerkinElmer] (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
GenePix Personal 4100A [Axon Instruments] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
Illumina NovaSeq X (1)
Illumina HiSeq X (1)
Illumina HiSeq 1500 (1)
Instrument (1)

Publication Date

2013 (80)
2015 (79)
2012 (72)
2010 (67)
2014 (62)
2011 (58)
2016 (36)
2008 (25)
2009 (21)
2020 (16)
2021 (15)
2026 (14)
2022 (14)
2007 (14)
2024 (11)
2006 (11)
2018 (10)
2005 (10)
2025 (9)
2023 (8)
2004 (6)
2019 (5)
2017 (3)
2003 (1)

UNIPROT ID/AC

P01325 (1)
P15208 (1)
P35569 (1)
Q9LQT8 (1)
Q9MAA7 (1)
8030.ENSSSAP00000000285 (1)
8030.ENSSSAP00000000444 (1)
8030.ENSSSAP00000000573 (1)
8030.ENSSSAP00000000871 (1)
8030.ENSSSAP00000001022 (1)
8030.ENSSSAP00000001240 (1)
8030.ENSSSAP00000001597 (1)
8030.ENSSSAP00000002059 (1)
8030.ENSSSAP00000002148 (1)
8030.ENSSSAP00000002643 (1)
8030.ENSSSAP00000002671 (1)
8030.ENSSSAP00000002680 (1)
8030.ENSSSAP00000002684 (1)
8030.ENSSSAP00000002690 (1)
8030.ENSSSAP00000002813 (1)
8030.ENSSSAP00000003421 (1)
8030.ENSSSAP00000003619 (1)
8030.ENSSSAP00000004518 (1)
8030.ENSSSAP00000004639 (1)
8030.ENSSSAP00000004862 (1)
8030.ENSSSAP00000004890 (1)
8030.ENSSSAP00000005034 (1)
8030.ENSSSAP00000005299 (1)
8030.ENSSSAP00000005306 (1)
8030.ENSSSAP00000005324 (1)

CHEBI ID

CHEBI:15354 (9)
CHEBI:10723 (1)
CHEBI:10983 (1)
CHEBI:1156 (1)
CHEBI:11805 (1)
CHEBI:11851 (1)
CHEBI:1189 (1)
CHEBI:12194 (1)
CHEBI:12947 (1)
CHEBI:1296 (1)
CHEBI:1301 (1)
CHEBI:13115 (1)
CHEBI:13705 (1)
CHEBI:1438 (1)
CHEBI:1463 (1)
CHEBI:15343 (1)
CHEBI:15345 (1)
CHEBI:15346 (1)
CHEBI:15347 (1)
CHEBI:15351 (1)
CHEBI:15355 (1)
CHEBI:15366 (1)
CHEBI:15367 (1)
CHEBI:15371 (1)
CHEBI:15372 (1)
CHEBI:15374 (1)
CHEBI:15377 (1)
CHEBI:15379 (1)
CHEBI:15380 (1)
CHEBI:15384 (1)

Metabolite Name

12,13-DiHOME (6)
9,10-DiHOME (6)
Choline (5)
Glycine (5)
Spermidine (5)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (4)
10-HDoHE (4)
11,12-DiHETrE (4)
11-HETE (4)
12,13-EpOME (4)
12-HEPE (4)
12-HETE (4)
13,14dh,15k-PGD2 (4)
13,14dh,15k-PGE2 (4)
13-HDoHE (4)
13-HODE (4)
13-HOTrE (4)
13-oxoODE (4)
14,15-DiHETrE (4)
14-HDoHE (4)
15-HEPE (4)
15-HETE (4)
15-HETrE (4)
15k-PGE2 (4)
16-HDoHE (4)
17-HDoHE (4)
19(20)-DiHDPA (4)
19(20)-EpDPE (4)
2-aminooctanoate (4)
2-hydroxyglutarate (4)

First Public Date

2014 (2)
2026 (1)
2021 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Peter MacCallum Cancer Centre, Melbourne, Australia Department of Anatomy and Physiology, The University of Melbourne, Melbourne, VIC, Australia (2)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands (1)
Department of Biochemistry & Molecular Biology Michigan State University (1)
Department of Mitochondrial Biology, Max Planck Institute for Biology of Ageing, Cologne, D-50931, Germany Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, SE-17177, Sweden Max Planck Institute for Biology of Ageing - Karolinska Institutet Laboratory, Karolinska Institutet, 171 77 Stockholm, Sweden (1)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Head Proteomics Group, Leiden University Medical Center, Center for Proteomics and Metabolomics, PO Box 9600, Postal zone P1-Q, 2300 RC Leiden, The Netherlands (1)
Institut of Clinical Chemistry (1)
Institute for Clinical Chemistry, Medical Faculty Mannheim of the University of Heidelberg (1)
Institute for Clinical Chemistry, Medical Faculty Mannheimof the University of Heidelberg (lab head) (1)
Institute of Chemistry, SAS (1)
Institute of Functional Genomics, University of Regensburg, Germany (1)
Institute of Zoology and Center of Molecular Bioscience Innsbruck, University of Innsbruck, 6020 Innsbruck, Austria (1)
Laboratory of Experimental Hematology, Vaccine and Infectious Disease Institute (Vaxinfectio), University of Antwerp, 2610 Wilrijk, Belgium (1)
Laboratory of Molecular Biology of Bacterial Pathogens, Institute of Microbiology, Czech Academy of Sciences (1)
Massachusetts Institute of Technology (1)
Max Planck Institute for Biology of Ageing, Joseph-Stelzmann-Str. 9b, 50931 Cologne, Germany Cologne Excellence Cluster on Stress Responses in ageing-associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 15Cologne, Germany (1)
Medical Faculty Mannheim, Institute for Clinical Chemistry (1)
Peter Brodersen, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen N, Denmark (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Ingolstädter Landstr.1 85764 Neuherberg, Germany (1)
Strand Leader and Lloyd Sansom Chair Biomaterials Engineering and Nanomedicine Future Industries Institute I Building X – X1-10 Mawson Lakes Campus I GPO Box 2471 University of South Australia Adelaide, South Australia 5001 (1)
Technical University of Darmstadt, Clemens-Schöpf Institute of Organic Chemistry and Biochemistry, Department of Chemistry, Peter-Grünberg-Straße 4, 64287, Darmstadt, Germany. (1)
Turku Proteomics Facility, Turku Bioscience (1)
Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (1)
University of Groningen. GRIP. (1)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Study type

Transcription profiling by array (395)
RNA-seq of coding RNA (51)
ChIP-seq (21)
Comparative genomic hybridization by array (17)
Methylation profiling by array (17)
Other (13)
ChIP-chip by tiling array (8)
Unknown experiment type (6)
RNA-seq of non coding RNA (6)
MicroRNA profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
Genotyping by array (2)
ScATAC-seq (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
MicroRNA profiling by high-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
Single nucleus RNA sequencing (1)
CUT&RUN (1)

Release Date

2015 (97)
2013 (82)
2014 (78)
2012 (78)
2010 (74)
2011 (64)
2016 (54)
2020 (51)
2023 (50)
2022 (48)
2021 (43)
2024 (36)
2025 (35)
2018 (29)
2008 (26)
2019 (24)
2017 (24)
2009 (22)
2026 (16)
2007 (16)
2006 (11)
2005 (10)
2004 (6)
2003 (2)

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Human non-small cell lung cancer cell line NCI-H661 DPPA2-4 rapid immunoprecipitation mass spectrometry (RIME, LC-MSMS)

To investigate DPPA2/4 bound proteins on chromatin we performed rapid immunoprecipitation mass spectrometry (RIME) following double crosslinking of chromatin in NCI-H661 non-small cell lung cancer cells clonal cell lines (Wild Type clones c51 & c52, DPPA2 knockout clones c41 & c42, DPPA4 knockout cl...

ORGANISM(S): Homo sapiens (Human)

2026-03-31 | PXD070627 | Pride

Transcription profiling of a complex phenotype: cord formation in Mycobacterium tuberculosis

Tuberculosis (2004) 84, 188196 (www.elsevierhealth.com/journals/tube),Comparative expression studies of a complex phenotype: cord formation in Mycobacterium tuberculosis,Qian Gao, Katharine Kripke, Zuhre Arinc, Martin Voskuil, Peter Small

ORGANISM(S): Mycobacterium tuberculosis

2005-11-03 | E-SMDB-2867 | biostudies-arrayexpress

Human non-small cell lung cancer cell line NCI-H661 DPPA2-4 immunoprecipitation mass spectrometry (LC-MSMS)

We performed endogenous DPPA2/4 immunoprecipitations from whole cell lysates of the human non-small cell lung cancer cell line NCI-H661, followed by LC-MS/MS to identify enriched proteins.

ORGANISM(S): Homo sapiens (Human)

2026-03-31 | PXD070581 | Pride

Lung Dppa4 Nci-h661 Immunoprecipitation Dppa2 Human

rat small intestine samples

Experiment description 1. Experimental design 1) Authors, laboratory, and contact: Xue-Lin Cui1, Patricia Soteropoulos2, Peter Tolias2, Ronaldo P. Ferraris1: 1Dept. of Pharmacology and Physiology, UMDNJ-New Jersey Medical School, Newark, NJ 07103-2714, 2Center for Applied Genomics, PHRI, 225 Warre...

ORGANISM(S): Rattus norvegicus

2010-06-09 | E-GEOD-996 | biostudies-arrayexpress

Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease

Gene expression profile in circulating leukocytes identifies patients with coronary artery disease Peter Sinnaeve, Mark Donahue, Peter Grass, Jacky Vonderscher, David Seo, Pascal Goldschmidt, Christopher Granger Department of Medicine, Duke University, Durham, NC, USA, Novartis Institute for Biome...

ORGANISM(S): Homo sapiens

2008-10-31 | E-GEOD-12288 | biostudies-arrayexpress

Transcription profiling of human memory T cells stimulated with Phl p-extract in healthy and allergic individuals

Differential transcriptional response of memory T cells stimulated with Phl p-extract in healthy and allergic individuals.

ORGANISM(S): Homo sapiens

2006-01-01 | E-MEXP-243 | biostudies-arrayexpress

Yeast D10 Small ~ WT San I

Transcriptional profiling of parental S. cerevisiae San I cells in comparison with its translocant derivative D10 Small strain. The latter strain was obtained using Bridge Induced translocation technique between DUR3 gene (Chromosome VIII) and ADH1 gene (Chromosome XV), and exhibited an abnormal phe...

ORGANISM(S): Saccharomyces cerevisiae

2010-09-03 | E-GEOD-23966 | biostudies-arrayexpress

Synechocystis sp. PCC 6803 proteome response to P-deficiency

Lipid droplets (LDs) are well integrated into multiple facets of cellular physiology and potentially represent an effective platform for the engineering of heterologous metabolic pathways. LDs of higher plant chloroplasts, known as plastoglobules (PGs), are critical mediators of stress tolerance thr...

ORGANISM(S): Synechocystis sp. PCC 6803

2025-05-21 | PXD051903 | Pride

Cyanobacteria Cyanoglobules Phosphorous Phosphate

Silveira_CYP26B1_BioID_P124_6600

Dataset description This dataset consists of 8 raw MS files and associated peak lists and results files, acquired on AB Sciex TripleTOF 6600 mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Ema Dreseris. BioID and Mass spectrometry acquisition was performed ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-04-26 | MSV000091800 | MassIVE

Integrated mutation, copy number and expression profiling in resectable non-small cell lung cancer

Study aims: to identify critical genes involved in non-small cell lung cancer (NSCLC) pathogenesis that may lead to a more complete understanding of this disease and identify novel molecular targets for use in the development of more effective therapies. Methods: Both transcriptional and genomic pro...

ORGANISM(S): Homo sapiens

2010-11-27 | E-GEOD-25326 | biostudies-arrayexpress

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