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MetabolomicsSubcellular organelle lipidomics in TLR-4-activated macrophages
Not available
ORGANISM(S): Mus musculus 
ST001288 | MetabolomicsWorkbench
TranscriptomicsSmall RNAs subcellular distribution in breast cancer and normal cell lines
We detect the small RNAs subcellular distribution in breast cancer cell lines MCF-7 and MDA-MB-231, and normal cell line MCF-10A. Each cell line, we detected the nuclear and cytoplasmic small RNAs expression intensity; and then we could get the nuclear-cytoplasmic-ratio.
ORGANISM(S): Homo sapiens 
2010-05-18 | E-GEOD-15937 | biostudies-arrayexpress
ProteomicsSubcellular proteomics of murine ESC-derived neurons
We studied the effects of different stimuli on on the subcellular proteome of neurons differentiated from murine embryonic stem cells (ESC). We focused on the changes in the chromatin-bound fraction to elucidate specific differences in the gene regulatory machinery activated upon stimulation with Br...
ORGANISM(S): Mus musculus (Mouse) 
2022-09-15 | PXD022378 | Pride
Neurons Stimulation Subcellular fractionation Tmt Bdnf Kcl Thermo q exactive plus 
TranscriptomicsDeep Sequencing of Human Nuclear and Cytoplasmic Small RNAs Reveals an Unexpectedly Complex Subcellular Distribution of miRNAs and tRNA 3' Trailers
Background: MicroRNAs (miRNAs) are 22-nt small non-coding regulatory RNAs that have generally been considered to regulate gene expression at the post-transcriptional level in the cytoplasm. However, recent studies have reported that some miRNAs localize to and function in the nucleus. Methodology/Pr...
ORGANISM(S): Homo sapiens 
2010-07-14 | E-GEOD-22918 | biostudies-arrayexpress
ProteomicsSubcellular fractionation of Escherichia coli by differential solubilization and analysis by Maxquant LFQ-analysis
The Planctomycetes have unique cell architectures with heavily invaginated membrane networks, as here confirmed by three-dimensional models reconstructed from FIB-SEM images of Tuwongella immobilis and Gemmata obscuriglobus. We studied the subcellular proteomes of T. immobilis, and for comparison Es...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2021-04-06 | PXD022526 | Pride
Escherichia coli Subcellular fractionation 
ProteomicsSubcellular fractionation of Tuwongella immobilis by differential solubilization and analysis by Maxquant LFQ-analysis
The Planctomycetes have unique cell architectures with heavily invaginated membrane networks, as here confirmed by three-dimensional models reconstructed from FIB-SEM images of Tuwongella immobilis and Gemmata obscuriglobus. We studied the subcellular proteomes of T. immobilis, and for comparison Es...
ORGANISM(S): Tuwongella immobilis 
2021-04-06 | PXD022559 | Pride
Tuwongella immobilis Subcellular fractionation 
ProteomicsPlasma and crude membrane fraction from mouse liver and kidney
The purpose of the present study was to validate the enrichment of transporter proteins in plasma membrane fraction prepared from mouse liver and kidney with Membrane Protein Extraction Kit by means of beads homogenize for efficient subcellular fractionation. The crude and plasma membrane fractions ...
ORGANISM(S): Mus Musculus (mouse) 
2020-09-26 | PXD018161 | JPOST Repository
ProteomicsiTRAQ-based Subcellular Proteome of Avibirnavirus-infected DF-1 Cells
Infectious bursal disease virus (IBDV) enters the host cells via endocytic pathway to achieve viral replication in the cytoplasm. We performed liquid chromatography-tandem mass spectrometry coupled with isobaric tags for relative and absolute quantification (iTRAQ) labeling of differential abundant ...
ORGANISM(S): Gallus gallus (Chicken) 
2020-05-26 | PXD001869 | Pride
Subcellular proteomics Ibdv-infected cells Itraq Gallus gallus Lc-ms/ms 
ProteomicsA snapshot of Bothrops jararaca snake venom gland subcellular proteome
The synthesis of snake venom proteins is subjected to finely regulated processes in the specialized secretory epithelium within the venom gland. Such processes occur within a defined time frame in the cell and at specific cellular locations. Thus, the determination of subcellular proteomes allows th...
ORGANISM(S): Bothrops jararaca (Jararaca) (Bothrops jajaraca) 
2023-09-30 | PXD040239 | Pride
Bothrops jararaca Snake venom Snake venom gland Proteome Subcellular fractionation 
ProteomicsQUANTITATIVE SUBCELLULAR PROTEOMICS OF THE ORBITOFRONTAL CORTEX OF SCHIZOPHRENIA PATIENTS
We analyzed orbitofrontal cortex post-mortem brain tissue from patients. We generated an organellar proteome map from different subcellular fractions such as mitochondria (MIT), crude nuclear fraction (NUC) and cytoplasm (CYT) with the aim to monitor the subproteome changes using iTRAQ labelling for...
ORGANISM(S): Homo sapiens (Human) 
2019-10-10 | PXD014284 | Pride
Cellular fractions Proteomics Schizophrenia Quantification 
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