Substrate delivery

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Unknown (934)
Transcriptomics (78)
Proteomics (43)
Genomics (18)
Metabolomics (6)
Models (2)
Genomic (1)
Methylation profiling (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (38)
Alteromonadales (38)
Candida albicans SC5314 (38)
Canis lupus familiaris (38)
Carya cathayensis (38)
Ectopseudomonas oleovorans CECT 5344 (38)
Ensifer adhaerens (38)
Enterococcus faecalis (38)
Globicatella sanguinis (38)
Halictus scabiosae (38)
Histomonas meleagridis (38)
Human immunodeficiency virus 1 (38)
Listeria monocytogenes (38)
Listeria monocytogenes EGD-e (38)
Methylohalobius crimeensis 10Ki (38)
Homo sapiens (37)
Mus musculus (18)
Rattus norvegicus (12)
Arabidopsis thaliana (3)
Escherichia coli (3)
groundwater metagenome (2)
Pseudomonas aeruginosa (2)
Gluconobacter oxydans 621H (1)
Aspergillus niger (1)
Papio hamadryas (1)
Macaca fascicularis (1)
Mycobacterium tuberculosis (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Drosophila melanogaster (1)

Organisms

Mus musculus (4)
Homo sapiens (4)
Rattus norvegicus (3)
Mycobacterium tuberculosis H37Rv (1)
Macaca mulatta (1)
freshwater metagenome (1)

Repository

biostudies-arrayexpress (73)
pride (38)
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geo (8)
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Tissue

Cell culture (6)
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Heart (1)
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Liver (1)
Permanent cell line cell (1)
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Plant cell (1)
Primary neuron (1)
Rosette (1)
Salivary gland (1)
Tibia (1)
Venom (1)
Venom gland (1)
Vitreous humor (1)
Whole membrane (1)

Disease

Disease free (3)
Diabetes mellitus (2)
Normal (1)
Breast cancer (1)
Cardiovascular system disease (1)
Colon cancer (1)
Congenital disorder of glycosylation (1)
Parkinson's disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (38)
Shotgun proteomics (23)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Mass spectrometry (4)
Gel-based experiment (4)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
SWATH MS (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

NextSeq 2000 (2)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
QSonica Q800R (1)
Illumina NovaSeq X (1)
NA (1)
BGISEQ-500 (1)
NextSeq 550 (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Leco Pegasus 4D GC×GC-TOFMS (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
API 5500 QTRAP (AB Sciex) (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2023 (13)
2012 (10)
2024 (9)
2014 (9)
2010 (9)
2026 (8)
2021 (8)
2016 (8)
2015 (8)
2025 (6)
2022 (6)
2020 (6)
2013 (6)
2011 (6)
2008 (6)
2018 (5)
2019 (4)
2009 (2)
2017 (2)
2004 (1)

CHEBI ID

CHEBI:16113 (3)
CHEBI:16828 (3)
CHEBI:29108 (2)
CHEBI:17138 (2)
CHEBI:15361 (2)
CHEBI:15422 (2)
CHEBI:16908 (2)
CHEBI:15611 (2)
CHEBI:18257 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:1148 (2)
CHEBI:16196 (2)
CHEBI:7916 (2)
CHEBI:18019 (2)
CHEBI:17203 (2)
CHEBI:18211 (2)
CHEBI:18183 (2)
CHEBI:16857 (2)
CHEBI:17053 (2)
CHEBI:17964 (2)
CHEBI:32816 (2)
CHEBI:16737 (2)
CHEBI:16414 (2)
CHEBI:17191 (2)
CHEBI:16643 (2)
CHEBI:17895 (2)
CHEBI:15756 (2)
CHEBI:17234 (1)
CHEBI:228252 (1)

Metabolite Name

Sarcosine (2)
4-MEAP (1)
5-Methyl-2-hexanone oxime (1)
*3-Hydroxyphenylpropionic acid, 2TMS (1)
Silane, trimethylphenoxy- (1)
3-Oxa-6-thia-2,7-disilaoctane, 2,2,7,7-tetramethyl- (1)
2-Methyl-1,2-bis(trimethylsilyloxy)butane (1)
2-Ethyl-3-hydroxypropionic acid, di-TMS (1)
Silane, [(2-ethylhexyl)oxy]trimethyl- (1)
(R*,S*)-3,4-Dihydroxybutanoic acid triTMS (1)
1H-Isoindole, 1,3-bis(trimethylsilyloxy)-1-[4-chloro-3-[[trimethylsilyl)amino]sulfonyl]phenyl]- (1)
Glycine, N-(2-methyl-1-oxopropyl)-, trimethylsilyl ester (1)
1-Di(tert-butyl)silyloxypentane (1)
Allylchlorodimethylsilane (1)
Methyl cis-2-trimethylsilyl-cyclopropane-1-carboxylate (1)
N,N',o-Tris-(trimethylsilyl)lysine (1)
Benzeneacetic acid, trimethylsilyl ester (1)
1-Naphthoic acid, 4-nitrophenyl ester (1)
*Cystine, 4TMS (1)
(S)-(+)-2-(Methoxymethyl)pyrrolidine (1)
Benzenepropanoic acid, à-[[(trimethylsilyl)oxy]imino]-, trimethylsilyl ester (1)
*Pantothenic acid, 5TMS (1)
4H-Benzo[b]pyrane-3-carbonitrile, 5,6,7,8-tetrahydro-2-amino-4-(3-cyclohexenyl)-7,7-dimethyl-5-oxo- (1)
Acrylic acid, 2,3-bis[(trimethylsilyl)oxy]-, trimethylsilyl ester (1)
(2-Ethoxyethoxy)acetic acid tms (1)
2,4(1H,3H)-Pyrimidinedione, dihydro-1,3-bis(trimethylsilyl)- (1)
*Arginine (monohydrochlorid), TMS (1)
3-Trimethylsilyloxy-5-nonyne (1)
2-Trimethylsilyloxyethyltrimethylsilylsulfonate (1)
2-Ketoisocaproic acid oxime, bis(trimethylsilyl)- deriv. (1)

IsPrivate

False (2)

First Public Date

2025 (3)
2023 (3)
2018 (2)
2014 (2)
2026 (1)
2022 (1)
2020 (1)
2019 (1)
2017 (1)
2016 (1)

Classification

bacteria (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (55)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Unknown experiment type (1)
RIP-chip by array (1)
Cell line - High-throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
ChIP-seq (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2021 (99)
2022 (88)
2023 (81)
2020 (81)
2025 (76)
2019 (71)
2024 (64)
2018 (63)
2014 (53)
2015 (49)
2016 (46)
2017 (40)
2012 (36)
2013 (32)
2011 (28)
2010 (27)
2009 (24)
2008 (14)
2026 (13)
2007 (7)
2006 (6)
2005 (3)
2002 (2)
2004 (1)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA (6)
1. School of Biosciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA (1)
1. School of Natural Sciences, Macquarie University, Sydney, NSW 2109, Australia 2. Institute for Glyco-core Research (iGCORE), Nagoya University, Nagoya, Japan (1)
Amicus Therapeutics (1)
Center for Bio/Molecular Science & Engineering (Code 6900), US Naval Research Laboratory, Washington DC, USA (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Cornell University, Ithaca, NY (USA) (1)
Department of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Department of Cellular and Molecular Pharmacology, School of Medicine, University of California San Francisco, USA (1)
Department of Chemical Sciences, University of Catania (1)
Department of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, Atlanta, GA 30303, USA (1)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States (1)
Department of Microbiology and Immunology, Jacobs School of Medicine & Biomedical Sciences, University at Buffalo, Buffalo, NY 14203, USA (1)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany (1)
Department of Nutritional Sciences and Toxicology University of California, Berkeley (1)
Department of Obstetrics, University and University Hospital of Zurich, Zurich, Switzerland (1)
Department of Pharmaceutical Sciences, University at Buffalo and NYS Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, USA (1)
Geriatrics and Gerontology, Department of Medicine, University of Wisconsin - Madison (1)
Helmholtz Munich (1)
Intercollegiate Faculty of Biotechnology, University of Gdansk and Medical University of Gdansk, 58 Abrahama St., 80-307 Gdansk, Poland (1)
Max Planck Institute for Moleclar Biomedicine Bioanalyticyl Mass Spectrometry Unit Röntgenstr. 20 48149 Münster Germany (1)
Molecular Biomimetics, Department of Chemistry – Ångström, Uppsala University, 751 20 Uppsala, Sweden Umeå Plant Science Center (UPSC), Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden (1)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (1)
Proteomics Department, Institute of Cellular Biology and Pathology "N. Simionescu", Romania (1)
Proteomics and Metabolomics Lab, Department of Translational Medicine (DiMeT), Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO), Italy (1)
School of Optometry, The Hong Kong Polytechnic University (1)
Spanish National Cancer Research Centre (CNIO) Address: Melchor Férnandez Almagro, 3. 28029 Madrid. SPAIN Phone: +34 917 328 000 Ext. 3110 (1)
Structural Studies Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom (1)
The Department of Biological Chemistry, The Johns Hopkins University School of Medicine, 725 N. Wolfe St., Baltimore, MD 21205-2185, USA, Telephone: (410) 955-7049; Fax: (410) 955-5759 (1)

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Design, mechanism, delivery and therapeutics of canonical and Dicer-substrate siRNA.

Not available

S-EPMC7032099 | biostudies-literature

Examining the modality-dependent target specificity of bioPROTACs by analysing global proteome changes following mRNA-encoded or recombinant protein biodegrader delivery.

Proteolysis targeting chimeras (PROTACs) have surged in popularity as a drug modality owing to their ability to degrade pathogenic proteins. Despite their advantages over conventional inhibitors, PROTAC discovery still requires high-affinity warheads, but ligands for undruggable proteins are difficu...

ORGANISM(S): Homo sapiens (Human)

2024-06-27 | PXD049388 | Pride

Enhanced Myocardial Glucose Delivery Accelerates Development of Mitochondrial Dysfunction in the Diabetic Heart

Cardiac glucose delivery and utilization are reduced in diabetes despite hyperglycemia. Mitochondrial dysfunction contributes to heart failure in diabetic patients. The loss of mitochondrial substrate flexibility in regulating cellular and cardiac function is actively under investigation.

ORGANISM(S): Mus musculus

2020-10-05 | GSE123975 | GEO

Enhanced Myocardial Glucose Delivery Accelerates Development of Mitochondrial Dysfunction in the Diabetic Heart

PRJNA510408 | ENA

Metal substrate catalysis in the confined space for platinum drug delivery.

Not available

S-EPMC8694326 | biostudies-literature

Transepithelial Electrical Impedance Increase Following Porous Substrate Electroporation Enables Label-Free Delivery.

Not available

S-EPMC10614851 | biostudies-literature

Master mitotic kinases regulate viral genome delivery during papillomavirus cell entry

Cell cycle progression into mitosis induce cellular rearrangements such as mitotic spindle formation, Golgi fragmentation, and nuclear envelope breakdown. Like certain retroviruses, nuclear delivery of HPV16 genomes is facilitated by these processes during entry into host cells by tethering of the v...

ORGANISM(S): Human papillomavirus type 16 Homo sapiens (Human) Escherichia coli

2022-12-22 | PXD028704 | Pride

Lc-msms Hpv Proteomics Cdk1 Mitosis Human papillomavirus Plk1 Virus entry Nuclear import

Analysis of reconstituted tripartite complex supports avidity-based recruitment of Hsp70 by substrate bound J-domain protein

Hsp70 are ubiquitous, versatile molecular chaperones that cyclically interact with substrate protein(s). The initial step requires synergistic interaction of a substrate and a J-domain protein (JDP) cochaperone, via its J-domain, with Hsp70 to stimulate hydrolysis of its bound ATP. This hydrolysis d...

ORGANISM(S): Escherichia coli Saccharomyces cerevisiae (Baker's yeast)

2024-02-19 | PXD044739 | Pride

Hsc20 Hsp70 atpase cycle Substrate delivery Ssq1 Molecular chaperones

Ribophorin I regulates substrate delivery to the oligosaccharyltransferase core.

Not available

S-EPMC2443820 | biostudies-literature

Function of clpF in the clp protease complex

The plant plastid Clp machinery comprises a hetero-oligomeric ClpPRT proteolytic core, ATP-dependent ClpC,D chaperones and an adaptor protein, ClpS1. ClpS1 directs a subset of substrates to the Clp protease-chaperone complex for degradation, but substrate recognition and delivery mechanisms are unkn...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2019-04-09 | PXD002186 | Pride

Lc-msms Plant cell Arabidopsis thaliana Coip Clp complex Chloroplast Stroma

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