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MetabolomicsTowards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase
Soil-borne microbes can establish compatible relationships with host plants, providing a large variety of nutritive and protective compounds in exchange for photosynthesized sugars. However, the molecular mechanisms mediating the establishment of these beneficial relationships remain unclear. Our pr...
2021-08-11 | MTBLS2597 | MetaboLights
TranscriptomicsTranscriptome profiling of switchgrass leaf grown under heat stress
In this study we were interested in identifying the gene networks that are responsive to chronic heat treatment in a switchgrass cultivar that is widely grown in the south-western USA and where 38C day temperatures have been reported for more than 100 days in the recent years. Switchgrass Alamo pla...
ORGANISM(S): Panicum virgaturm 
2014-01-14 | E-MTAB-1897 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of switchgrass lines NL94-298 (low tillering) and NL94-145 (high tillering) to identify genes associated with high tillering trait
The most effective method of micro-propagation for clonal replicates for switchgrass seed production is from the axillary buds of the lower nodes. We hypothesized that buds and nodes from low and high tillering lines from an inbred population will aid in identifying genes important for the different...
ORGANISM(S): Panicum virgaturm 
2014-01-14 | E-MTAB-1899 | biostudies-arrayexpress
ProteomicsProteome profile of the endomembrane of developing coleoptiles from switchgrass
Switchgrass is currently one of the plant species being investigated as a potential biofuels crop. Genetic manipulation can be used to optimize and improve switchgrass to have more properties better suited for biofuels production. We have conducted a proteome with a focus on the endomembrane system...
ORGANISM(S): Panicum virgatum (Switchgrass) 
2015-03-12 | PXD001351 | Pride
Switchgrass Coleoptile Panicum virgatum Proteome Endomembrane 
ProteomicsSwitchgrass drought-induced leaf proteomics analysis
Switchgrass (Panicum virgatum) is a perennial crop producing deep roots thus highly tolerant to soil water deficit conditions. However, seedling establishment in field is very susceptible to prolonged and periodic drought stress. In this study, a “sandwich” system simulating a gradual water deletion...
ORGANISM(S): Panicum virgatum (Switchgrass) 
2016-08-09 | PXD004675 | Pride
Eight-plex-itraq  proteominer  drought tolerance 
ProteomicsIntegrated omics analysis reveals metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass
Integrated omics analysis reveals metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass
ORGANISM(S): Hungateiclostridium Thermocellum (ncbitaxon:1515) 
MSV000080128 | MassIVE
ProteomicsGreenbug (Schizaphis graminum) Herbivory Effect on Switchgrass (Panicum virgatum) Proteome
Cereal aphids can successfully colonize and damage switchgrass (Panicum virgatum) plants. Among the aphids tested, greenbugs (Schizaphis graminum, GB) caused significant plant damage likely through a combination of aphid-salivary proteins that are injected into plants during feeding and a strong hos...
ORGANISM(S): Panicum virgatum (Switchgrass) 
2022-02-04 | PXD018547 | Pride
Greenbug Proteome Shotgun Switchgrass Label-free Lc-ms/ms 
ProteomicsDynamic Reconfiguration of Switchgrass Proteomes in Response to Rust (Puccinia novopanici) Infection
Switchgrass (Panicum virgatum) can be infected by the rust pathogen (Puccinia novopanici) resulting in lowering biomass yields and quality. Here, two cultivars with divergent rust resistance were used to evaluate the dynamic changes in proteomes following rust inoculation. Label-free quantitative p...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2023-10-24 | PXD036978 | Pride
Lfq Switchgrass Rust Proteome 
ProteomicsGreenbug (Schizaphis graminum) Herbivory Effect on Switchgrass (Panicum virgatum) PhosphoProteomeGreenbug (Schizaphis graminum) Herbivory Effect on Switchgrass (Panicum virgatum) PhosphoProteome
Cereal aphids can successfully colonize and damage switchgrass (Panicum virgatum) plants. Among the aphids tested, greenbugs (Schizaphis graminum, GB) caused significant plant damage likely through a combination of aphid-salivary proteins that are injected into plants during feeding and a strong hos...
ORGANISM(S): Panicum virgatum (Switchgrass) 
2022-02-04 | PXD018546 | Pride
Greenbug Phosphoproteome Shotgun Switchgrass Label-free Lc-ms/ms 
TranscriptomicsTranscriptome profiling of switchgrass over expressing Medicago STENOFOLIA (STF) gene
To gain insight into the mechanistic effects of STENOFOLIA (STF) on cell proliferation and overall plant development, we performed transcript profiling analysis using the switchgrass Affymetrix GeneChip and compared gene expression between three independent STF overexpressing Group â…¡ plants (genot...
ORGANISM(S): Panicum virgatum 
2017-02-28 | E-MTAB-5539 | biostudies-arrayexpress
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