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TranscriptomicsTranscription profiling of E. coli K-12 W3110 strain grown at Ph5.7, 7.0, 8.5 reveals pH and anaerobiosis coregulate metabolism, multidrug transporters, and envelope composition
In Escherichia coli, pH-dependent gene expression varies with oxygen level. Anaerobic pH-dependent expression ratios were analyzed and compared to the published analysis of aerated cultures (Maurer et al, 2005). E. coli K-12 strain W3110 was cultured in closed tubes containing LBK broth buffered a...
ORGANISM(S): Escherichia coli 
2008-06-13 | E-GEOD-4556 | biostudies-arrayexpress
TranscriptomicsLactobacillus acidophilus and Helicobacter pylori stimulation of bone marrow derived macrophage
Helicobacter pylori causes chronic gastritis and avoids elimination by the immune system of the infected host. The commensal bacterium Lactobacillus acidophilus has been reported to exert beneficial effects as a supplement during H. pylori eradication therapy. In the present study, we applied whole ...
ORGANISM(S): Mus musculus 
2013-07-02 | E-GEOD-42622 | biostudies-arrayexpress
UnknownOxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12.
Not available
S-EPMC1626474 | biostudies-literature
UnknownDesign and Synthesis of Hybrid PEGylated Metal Monopicolinate Cyclam Ligands for Biomedical Applications.
Not available
S-EPMC6648416 | biostudies-literature
TranscriptomicsEffect of surface waters from Eglin Air Force Base on gene expression in fathead minnow (Pimephales promelas)
The federally endangered Okaloosa darter (Etheostoma okaloosae) is found almost exclusively on the Eglin Air Force Base in the Choctawhatchee Bay watershed of Florida. Portions of this limited habitat are threatened with erosion of soils, altered hydrology, and impaired water quality. One stream rea...
ORGANISM(S): Pimephales promelas 
2010-08-11 | E-GEOD-23521 | biostudies-arrayexpress
ProteomicsACBD6-related progressive neurodevelopmental disorder – chemical proteomics of YnMyr-labelled proteins in developing Xenopus tropicalis
In quadruplicate for each condition, 10 acbd6 WT, 68 acbd6 crispant and 71 crispant X. tropicalis embryos were incubated with 20 μM YnMyr for 17 h. After labelling, embryos were washed twice with fresh 0.05 x MMR, flash frozen in liquid nitrogen and stored at -80°C until further analysis.
ORGANISM(S): Xenopus tropicalis 
2024-06-16 | PXD043677 | Pride
Acbd6 Xenopus tropicalis N-myristoylation Ynmyr 
ProteomicsACBD6-related progressive neurodevelopmental disorder – chemical proteomics of YnMyr-labelled proteins in developing Danio rerio (zebrafish)
In triplicate for each condition, 12 WT and acbd6 F0 crispant Danio rerio (zebrafish) embryos were incubated with 20 μM YnMyr for 24 h, either between 48-72 hpf or 96-120 hpf. After labelling, zebrafish were washed twice with fresh egg water, deyolked, flash frozen in liquid nitrogen and stored at -...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2024-06-16 | PXD043676 | Pride
Acbd6 Danio rerio N-myristoylation Ynmyr 
TranscriptomicsRNA sequencing of two protein phosphatases(ppm2 and ppm5) knockouts in Plasmodium berghei to study their role in the parasite's sexual development
To identify protein phosphatases (PP) that are essential during asexual blood stage development in Plasmodium berghei, we attempted systematic deletion of the 30 P. berghei PP genes using double homologous recombination. Of these, we performed strand-specific RNA-sequencing (RNA-Seq) analysis for 2...
ORGANISM(S): Plasmodium berghei 
2014-04-16 | E-MTAB-2215 | biostudies-arrayexpress
ProteomicsACBD6-related progressive neurodevelopmental disorder – whole proteome of developing Xenopus tropicalis
In quadruplicate for each condition, 10 acbd6 WT, 68 acbd6 crispant and 71 crispant X. tropicalis embryos were incubated with 20 μM YnMyr for 17 h. After labelling, embryos were washed twice with fresh 0.05 x MMR, flash frozen in liquid nitrogen and stored at -80°C until further analysis.
ORGANISM(S): Xenopus tropicalis 
2024-06-16 | PXD043680 | Pride
Acbd6 Xenopus tropicalis Whole proteome 
ProteomicsACBD6-related progressive neurodevelopmental disorder – whole proteome of developing Danio rerio (zebrafish)
In triplicate for each condition, 12 WT and acbd6 F0 crispant Danio rerio (zebrafish) embryos were incubated with 20 μM YnMyr for 24 h, either between 48-72 hpf or 96-120 hpf. After labelling, zebrafish were washed twice with fresh egg water, deyolked, flash frozen in liquid nitrogen and stored at -...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2024-06-16 | PXD043679 | Pride
Acbd6 Whole proteome Danio rerio 
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