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Transcriptomicscms4:19 and at chr3-Comparing nuclear gene expression in two CMS-systems using microarray technology
ra05-11_cmsrapeseed - cms4:19 and at chr3 - -To understand how/if fertility and the mitochondrial background are interlinked. -To understand how the mitochondrial background influences the nuclear gene expression. -Compare and describe the total nuclear gene expression of CMS vs. fertile and CMS vs....
ORGANISM(S): Brassica napus 
2008-07-31 | E-GEOD-8819 | biostudies-arrayexpress
MetabolomicsELAPOR1 induces the classical/progenitor subtype and contributes to reduced disease aggressiveness through metabolic reprogramming in pancreatic cancer
Pancreatic ductal adenocarcinoma (PDAC) is a heterogeneous disease with distinct molecular subtypes described as classical/progenitor and basal-like/squamous PDAC. We hypothesized that integrative transcriptome and metabolome approaches can identify candidate genes whose inactivation contributes to ...
2024-04-02 | MTBLS9418 | MetaboLights
ProteomicsFirst dataset - bacterial proteome of carbapanemase-producing Escherichia coli and other Enterobacteriaceae under antibiotic pressure
Antibiotic resistance associated with the expression of the clinically significant carbapenemases, IMP, KPC, and NDM and OXA-48 in Enterobacteriaceae is emerging as a worldwide calamity to health care. In Australia, IMP-producing Enterobacteriaceae is the most prevalent carbapenemase-producing Ent...
ORGANISM(S): Escherichia coli 
2018-07-11 | PXD008019 | Pride
Carbapenemases Kpc Proteomics Swath analysis Imp Antibiotic resistance Ndm 
TranscriptomicsRNA-Seq of human bronchial cells (BEAS-2B) treated with 4-40 µg/mL Cu by CuO NP and ionic Cu, and human hepatoblastoma cells (HepG2) treated with 4-40 µg/mL ionic Cu compared to untreated controls
Cu is an essential trace element for the human body, and moreover, increasingly used in industry and clinical applications due to many favorable characteristics of this transition metal. In this context, it has been shown that CuO NP are more toxic than, e.g., CuO MP or ionic copper. Nevertheless, d...
ORGANISM(S): Homo sapiens 
2026-05-24 | E-MTAB-16794 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of Bacillus anthracis growing inside murine macrophages
This experiment follows gene expression within B. anthracis while the bacteria are growing inside murine macrophages, from 1-6 hours post-infection.
ORGANISM(S): Bacillus anthracis 
2007-05-11 | E-MEXP-1036 | biostudies-arrayexpress
MetabolomicsExploring the Glucose Fluxotype of the E. coli y-ome Using High-Resolution Fluxomics
We have developed a robust workflow to measure high-resolution fluxotypes (metabolic flux phenotypes) for large strain libraries under fully controlled growth conditions. This was achieved by optimizing and automating the whole high-throughput fluxomics process and integrating all relevant software ...
2021-05-13 | MTBLS2188 | MetaboLights
ProteomicsiTRAQ MS of mouse LbetaT2 cells transfected with Galphas siRNA vs. scrambled siRNA
Twenty million LbetaT2 cells were transfected with either control or Galphas siRNA, then were seeded in 100-mm cell culture plates in DMEM + 10% FBS. Two days later, cells were washed twice with pre-warmed PBS. Conditioned media was harvested another 24 h later, and centrifuged at 20,000 g for 10 mi...
ORGANISM(S): Mus musculus (Mouse) 
2016-09-27 | PXD000063 | Pride
Pituitary gonadotrope-derived lbetat2 cells Ab sciex tof/tof 5800 Mouse 
TranscriptomicsHuman embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs
Human and mouse embryonic stem cells (ESCs) are derived from blastocyst stage embryos but have very different biological properties, and molecular analyses suggest that the pluripotent state of human ESCs isolated so far corresponds to that of mouse derived epiblast stem cells (EpiSCs). Here we rewi...
ORGANISM(S): Homo sapiens 
2010-05-07 | E-GEOD-21222 | biostudies-arrayexpress
TranscriptomicsGlobal gene expression by Bacillus anthracis during growth in mammalian blood
Comparison of gene expression between bovine blood and culture media
ORGANISM(S): Bacillus anthracis str. Sterne 
2015-08-18 | E-MTAB-3828 | biostudies-arrayexpress
ProteomicsProteome-wide characterization of FAS2 genomic elements swap
Protein synthesis is a highly regulated process that ensures the efficient assembly of protein complexes. Co-translational interactions are crucial to ensure the timely formation of functional protein complexes. One factor that can facilitate complex assembly is the spatial organization of mRNA with...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2026-02-09 | PXD068196 | Pride
Complex Yeast Fas2 Co-translational 
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