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ProteomicsChaetomium thermophilum Naa50 and Naa15 TMT-labeled LC-MSMS
TMT-labeled LC-MSMS was performed to identify and quantify proteins from three different TAP-purification pull-outs from Chaetomium thermophilum. The aim was to identify interaction partners and to study, whether the two tagged proteins (Naa50 and Naa15) are likely to interact, as they do in other o...
ORGANISM(S): Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) 
2022-10-14 | PXD035320 | Pride
Naa50 naa15 lc-msms tmt chaetomium thermophilum 
UnknownDetermining Plasma Protein Variation Parameters as a Prerequisite for Biomarker Studies-A TMT-Based LC-MSMS Proteome Investigation.
Not available
S-EPMC8707687 | biostudies-literature
ProteomicsOne-STAGE Tip Method for TMT based Proteomic Analysis of Minimal Amount of Cells
LC-MS-based profiling of proteomes with isobaric tag labeling from low-quantity biological and clinical samples, including needle-core biopsies and laser capture microdissection, has been challenging due to limited amount and sample loss during preparation. To address this problem, we developed OnM ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-04-18 | MSV000091734 | MassIVE
ProteomicsControl vs Elp3-deficient mouse myeloid progenitors 6-plex TMT LC-MSMS
6-plex TMT LC-MSMS quantification of proteins in myeloid progenitors (Lineage- Sca1- Kit+ cells) isolated from the bone marrow of 8-12 week old male and female control and Elp3-deficient (Elp3fl/fl vav-iCreT/+) mice. Biological triplicates of each genotype were analyzed, each consisting of 1.10e6 ce...
ORGANISM(S): Mus musculus (Mouse) 
2021-01-26 | PXD010486 | Pride
Elongator Myeloid progenitor Elp3 Trna Hematopoiesis 
ProteomicsAbyssorchomene distinctus LC-MSMS with TMT Labeling
Despite the fact that deep sea mining is becoming more popular nowadays in terms of obtaining metals ores for daily life purposes, its potential impact to the deep sea habitat, which is originally stable and converse, stills remains uncertain. In order to estimate and regulate the imapct of deep sea...
ORGANISM(S): Abyssorchomene distinctus 
2019-10-30 | PXD012778 | Pride
Lc-msms Abyssorchomene distinctus Tmt labeling 
ProteomicsPandanus amaryllifolius drought stress and recovery LC-MSMS TMT-Labelled
The aim of this project is to determine the protein changes of P. amaryllifolius in response to drought stress and during recovery. The protein changes between drought-stressed, well-watered, and recovered plants were evaluated using tandem mass tags (TMT)-based quantitative proteomics. The proteins...
ORGANISM(S): Pandanus amaryllifolius 
2022-02-16 | PXD028784 | Pride
Lc-msms Drought stress Abiotic stress Pandanus amaryllifolius Tmt-labelled Recovery 
ProteomicsSynechococcus elongatus PCC7942 proteome's cyclic rhythm by LC-MSMS
To uncover the variation in protein abundances during 48 hours under light and dark cycles (12:12-hours), we used quantitative proteomics, with TMT 6-plex isobaric labeling. We queried the S. elongatus proteome at ten different time points spanning a single 24 hour period, leading to 20 time points ...
ORGANISM(S): Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2) 
2014-04-02 | PXD000510 | Pride
Synechococcus elongatus pcc7942 Lc-msms Tmt 6-plex Circadian clock 
ProteomicsPig Feces Metaproteome, LC-MSMS, TMT12Plex
Microbiome analysis has relied largely on metagenomics to characterize microbial populations and predict their functions. Here, we used a TMT LC-MSMS metaproteomic analysis of the fecal microbiome in piglets before and after weaning to compare protein abundances as they pertain to microbial populati...
ORGANISM(S): Fungi Bacteria Sus scrofa domesticus (domestic pig) 
2025-05-26 | PXD063155 | Pride
Lc-msms Metaproteome Tmt Pig 
ProteomicsComparative LC-MSMS Analysis of Extracellular Vesicles Extracted from Mouse Caecum in Fasted vs. Fed Mice
Bacterial extracellular vesicles (BEVs) produced by members of the intestinal microbiota can contribute not only to digestion but also mediate microbe-host cell communication via the transfer of functional biomolecules to mammalian host cells. An unresolved question is what host factors and conditio...
ORGANISM(S): Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) Mus musculus (Mouse) 
2025-05-26 | PXD062737 | Pride
Lc-msms Extraccellular vesicles Bacteroides thetaiotaomicron 
ProteomicsTargeting kinome reprogramming in ESR1 fusion-driven breast cancer
Multiplexed, deep-scale LC-MSMS analysis for proteome and phosphoproteome expression profile and the targeted LC-MSMS analysis for kinases in enriched kinome of the ER+ breast cancer patient-derived xenograft tumors.
ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human) 
2023-10-24 | PXD036644 | Pride
Lc-msms Esr1 fusion Breast cancer Breast cancer patient-derived xenograft (pdx) tumor Proteome Phosphoproteome 
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