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ProteomicsTrimodal chromatography enables facile peptide fractionation
We evaluated the utility of a trimodal stationary phase (Trinity P1) in offline peptide fractionation, and found it performed similarly to ion exchange or high pH reversed phase based techniques. It is orthogonal to low pH reversed phase and uses MS compatible mobile phase solvents.
ORGANISM(S): Homo sapiens (Human) 
2017-08-07 | PXD006188 | Pride
Peptide fractionation Proteomics Trinity p1 Orthogonality 2d-lc Pancreatic cancer 
TranscriptomicsNext generation sequencing establishes the differentially expression profiles of transgenic rainbow trout bearing cecropin P1 transgene
Purpose: mRNA-Seq to reveal the differentially expression pattern of genes in innate/adaptive immune relevant pathways, and combining to the previous DNA microarray analysis to address the immunomodulatory effects of cecropin P1 transgene in rainbow trout. Methods: Total RNA were isolated from three...
ORGANISM(S): Oncorhynchus mykiss 
2018-03-03 | GSE111373 | GEO
ProteomicsTyrosine-protein phophatase non-receptor type 2 (PTPN2) deficiency increases short-lived effector T-cell survival and augments autonomous proliferation of T-cells
Whole proteome and phosphoproteome analysis of T-cells isolated from PTPN2 wild-type and knock-out micestrongly linked amplified T cell numbers to increased proliferation mediated by transcriptional activation of the signal transducer and activator of transcription (STAT) protein family. Subsequent ...
ORGANISM(S): Mus musculus (Mouse) 
2020-07-29 | PXD013122 | Pride
T-cells Ms3 Tmt Ptpn2 Phosphoproteomics 
GenomicsNext generation sequencing establishes the differentially expression profiles of transgenic rainbow trout bearing cecropin P1 transgene
Next generation sequencing establishes the differentially expression profiles of transgenic rainbow trout bearing cecropin P1 transgene
PRJNA436731 | ENA
UnknownRNA-Seq analysis of differentially expressed genes relevant to innate and adaptive immunity in cecropin P1 transgenic rainbow trout (Oncorhynchus mykiss).
Not available
S-EPMC6195682 | biostudies-literature
ProteomicsMeltome Atlas - thermal proteome stability across the tree of life
We have developed a mass spectrometry-based approach that allowed us to quantitatively monitor protein stability across a broad range of temperatures at the proteome scale (meltome). We profiled the meltomes of several microorganisms and eukaryotic species including human, allowing to investigate th...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) Picrophilus torridus Oleispira antarctica Arabidopsis thaliana (Mouse-ear cress) Mus musculus (Mouse) Drosophila melanogaster (Fruit fly) Caenorhabditis elegans Geobacillus stearothermophilus Homo sapiens (Human) Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) Bacillus subtilis 
2020-04-29 | PXD011929 | Pride
Protein stability Thermostability Meltome atlas Melting point Thermal proteome profiling 
ProteomicsHuman Breast Milk TMT labeled Rescored with Prosit
We Have human breast milk dataset in this project. We predict all spectra in the datasets via Prosit then rescore. We have 100% FDR maxquant search results, and using percolator we get 1%FDR filtered results with andromeda Scores and another with features extracted from Prosit predictions.
ORGANISM(S): Homo sapiens (Human) 
2022-05-26 | PXD030339 | Pride
Human Ms3 Tmt11plex Breast milk It Iontrap 
UnknownReactive Centre Loop Mutagenesis of SerpinB3 to Target TMPRSS2 and Furin: Inhibition of SARS-CoV-2 Cell Entry and Replication.
Not available
S-EPMC9604144 | biostudies-literature
UnknownSequence diversity in the A domain of Staphylococcus aureus fibronectin-binding protein A.
Not available
S-EPMC2390562 | biostudies-literature
UnknownGene expression changes during retinal development and rod specification.
Not available
S-EPMC4301594 | biostudies-literature
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