Tripletof5600 - OmicsDI

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Proteomics (67)
Metabolomics (6)
Unknown (2)
Other (1)

Organisms

Schizophyllum commune H4-8 (50)
Mycobacterium tuberculosis SP7 (50)
Mycobacterium tuberculosis SP10 (50)
Mycobacterium tuberculosis SP13 (50)
Mycobacterium tuberculosis SP22 (50)
Chlamydomonas reinhardtii (50)
Enterococcus mundtii CRL35 (50)
Oncorhynchus tshawytscha (50)
Pseudomonas canadensis (50)
Influenza A virus (A/California/04/2009(H1N1)) (50)
Pseudomonas aeruginosa PAO1H2O (50)
Human alphaherpesvirus 1 strain 17 (50)
Quercus petraea (50)
Mycobacterium tuberculosis SP1 (50)
Marchantia polymorpha subsp. ruderalis (50)
Methylocystis sp. (50)
Exiguobacterium sp. SH31 (50)
Palaemonetes sp. common grass shrimp associated circular virus (50)
Amaranthus tricolor (50)
Spirochaeta sp. ELBA (50)
Acipenser sturio (50)
Clavibacter nebraskensis NCPPB 2581 (50)
Porites pukoensis (50)
Porphyromonas gingivalis (50)
Leishmania tarentolae (50)
Porphyromonas gingivalis W83 (50)
Human betaherpesvirus 5 (50)
Homo sapiens (8)
cellular organisms (3)
Arabidopsis thaliana (2)

Repository

pride (50)
jPOST (13)
MassIVE (5)
GNPS (4)
MetaboLights (2)

Tissue

Leaf (6)
Endosperm (5)
Plant cell (5)
Blood serum (4)
Cell culture (4)
Macrophage (3)
Brain (3)
Liver (3)
Quadriceps (2)
Skin (2)
Muscle (2)
Heart (2)
Blood plasma (2)
Spikelet (1)
Hypha (1)
Gastrocnemius (1)
Breast cancer cell (1)
Intestine (1)
Seed (1)
Cerebrospinal fluid (1)
Brown adipose tissue (1)
Diploid cell (1)
Bone marrow (1)
Primary cell (1)
Hepatocyte (1)
Epithelial cell (1)
B cell (1)

Disease

Lymphoma (2)
Tuberculosis (2)
Disease free (2)
Dental caries (1)
Chronic bronchitis (1)
Squamous cell carcinoma (1)
Huntington Disease (1)
Mixed disorder as reaction to stress (1)

Technology Type

Mass Spectrometry (50)
SWATH MS (23)
Shotgun proteomics (19)
Top-down proteomics (4)
SRM/MRM (3)
Bottom-up proteomics (3)
Mass spectrometry (2)
Data-dependent acquisition (2)
Data-independent acquisition (1)
Gel-based experiment (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

ABsciex TripleTOF5600 (4)
Agilent 5977B, TripleTOF5600 (2)
TripleTOF 5600 (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
TripleTOF5600 (1)
Synapt MS (1)
TripleTOF 6600 (1)
Q Exactive HF (1)
TimsTOF Pro (1)

Publication Date

2020 (15)
2024 (9)
2023 (9)
2019 (9)
2022 (8)
2018 (8)
2021 (7)
2016 (4)
2026 (2)
2017 (2)
2014 (1)

CHEBI ID

CHEBI:34851 (2)
CHEBI:177479 (2)
CHEBI:108595 (2)
CHEBI:10043 (2)
CHEBI:16205 (2)
CHEBI:45892 (2)
CHEBI:58128 (2)
CHEBI:9629 (2)
CHEBI:16269 (2)
CHEBI:68656 (2)
CHEBI:28125 (2)
CHEBI:42504 (2)
CHEBI:64575 (2)
CHEBI:16113 (2)
CHEBI:6643 (2)
CHEBI:5792 (2)
CHEBI:49033 (2)
CHEBI:18186 (2)
CHEBI:16708 (2)
CHEBI:28875 (2)
CHEBI:28842 (2)
CHEBI:9009 (2)
CHEBI:142245 (2)
CHEBI:16335 (2)
CHEBI:51041 (2)
CHEBI:29016 (2)
CHEBI:16737 (2)
CHEBI:27897 (2)
CHEBI:17295 (2)
CHEBI:31169 (2)

Metabolite Name

2,3-Dihydroxybiphenyl (1)
Raspberry ketone (1)
Bonactin (1)
3-HYDROXYBUTANOIC ACID (1)
Hydroxymethylglutaric acid (1)
L-(-)-Phenylalanine (1)
L-allo-Threonine (1)
5-Methoxypsoralen (1)
3-HYDROXY-4-(SUCCIN-2-YL)-CARYOLANE delta-LACTONE (1)
2-DEOXY-D-GLUCOSE (1)
L-PROLINE (1)
L-(-)-Threonine (1)
9-Fluorenone (1)
5,6-Dimethylbenzimidazole (1)
DETHIOBIOTIN (1)
Docosahexanoic acid (1)
FA 18:1+1O (1)
DL-2-Hydroxyvaleric acid (1)
L-Norvaline (1)
Magnolol (1)
Trans-Ferulic acid (1)
Trifluoroacetic acid (1)
Leucine (1)
Ketoleucine (1)
Pentadecanoic acid (1)
12-HETE (1)
Aleuretic Acid (1)
Indoxyl sulfate (1)
Geranic acid (1)
3-Indolepropionic acid (1)

Modification

MTRAQ heavy (1)
ITRAQ4plex-117 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Release Date

2022 (1)
2018 (1)

Lab affiliation

School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (7)
Translational Health Science and Technology Institute (2)
Research Officer|Proteomics and Small Molecule Mass Spectrometry Laboratory | Central Analytical Research Facility (CARF)| Queensland University of Technology | Address: Level 6, P Block, Gardens Point Campus, 2 George St Brisbane QLD 4000 (2)
The University of Queensland, Queensland Alliance for Agriculture and Food Innovation, Centre for Animal Science (1)
The University of Queensland, Queensland Alliance for Agriculture and Food innovation, Centre for Animal Science (1)
Institute of Advanced Technology, Kindai University (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
Chair of the Department of Functional Genomics Institute of Functional Genomics, University of Regensburg, Am Biopark 9, 93053 Regensburg, Germany ( lab head ) (1)
Drug Discovery Research Center (DDRC), Translational Health Science and Technology Institute (THSTI), NCR Biotech Science Cluster, Faridabad, Haryana. India (1)
Assistant Professor, Faculty of Dentistry, National University of Singapore (1)
Non Communicable Disease Group, Translational Health Science and Technology Institute, NCR Biotech Science Cluster, Faridabad. Haryana (1)
Department of Developmental and Regenerative Neurobiology, Institute of Brain Science, Nagoya City University Graduate School of Medical Sciences, Japan (1)
Institue of Molecular Systems Biology ETH Zurich, Switzerland (1)
Laboratory of Pharmaceutical Biotechnology. Department of Pharmaceutics, Ghent University, Belgium (1)
Lab head of Mass Spectrometry Laboratory, Intercollegiate Faculty of Biotechnology University of Gdańsk and Medical University of Gdańsk, Abrahama 58, 80-307 Gdańsk, Poland (1)
Department of Chemistry, Univeristy of North Carolina at Chapel Hill (1)
Medical School of Nanjing University (1)
Center for Scientific Research and Higher Education of Ensenada (CICESE) (1)
Centre for Animal Science Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Australia (1)
Department of Chemistry, University of North Carolina at Chapel Hill, NC, USA (1)
Faculty of Veterinary Medicine Department of Preclinical Sciences and Pathology (PREPAT), Norwegian University of Life Sciences (NMBU), ÅS, Norway (1)
Department of Chemistry, National University of Singapore, Singpaore (1)
Northeast forestry university (1)
Institue of Molecular Systems Biology ETH Zurich, Switzerland ( lab head ) (Alternate contact: Johan Auwerx, admin.auwerx@epfl.ch ; EPFL, Switzerland (lab head)) (1)
Laboratory of Applied Proteome Analyses, Institute of Animal Physiology and Genetics of the Czech Academy of Sciences, Libechov, Czech Republic (1)
Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Australia (1)
University of Gdansk, Intercollegiate Faculty of Biotechnology, Proteomics Laboratory (1)
Kyushu University (1)
Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin (1)
The Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, 1 Midland Rd, London NW1 1AT, UK (1)

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A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics

A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics using SCIEX TripleTOF5600 and 6600+, Orbitrap QE-HFX, Waters Synapt GS-Si and Synapt XS and Bruker timsTOF Pro.

ORGANISM(S): Candida albicans (Yeast) Homo sapiens (Human) Escherichia coli

2022-02-14 | PXD028735 | Pride

Host cholesterol modulates the generation and enrichment of persister population during Mycobacterium tuberculosis infection.

We previously reported that the utilization of host cholesterol is essential for mycobacterial persistence. In this study, we demonstrated that cholesterol-induced activation of a ribonuclease toxin (VapC12) inhibits translation by targeting proT tRNA in Mtb. The resulting cholesterol-specific growt...

ORGANISM(S): Mycobacterium tuberculosis Mycobacterium tuberculosis M24

2020-10-14 | PXD014323 | Pride

Proteomics Tripletof5600 Mycobacterium Mass-spectrometer

SWATH-MS in quality control of biologicals: Towards confident label-free and non-targeted quantification with single injection? - An illustration with plasma residuals profiling in human immunoglobulin.

By performing data-independent acquisition (DIA), SWATH-MS is expected to provide comprehensive and repeatable spectral data that can be perpetually interrogated by reference spectral libraries. In the context of biological sample quality control, a benchmark spectral library could index all the pos...

ORGANISM(S): Homo sapiens (Human)

2022-10-04 | PXD007656 | Pride

Single injection Immunoglobulin Tripletof5600 Biologicals Swath ms

A comprehensive LFQ benchmark dataset to validate data analysis pipelines on modern day acquisition strategies in proteomics

ORGANISM(S): Escherichia Coli (ncbitaxon:562) Candida Albicans (ncbitaxon:5476) Homo Sapiens (ncbitaxon:9606)

2024-10-23 | MSV000096179 | MassIVE

Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue

10 µm formalin-fixed paraffin-embedded tissue sections were deparaffinized with xylene; homogenization was performed in lysis-buffer (20 mM Tris-HCl, pH 8.8, 200 mM glycine, 200 mM DTT, 4% SDS)in an ultrasonic bath; samples were incubated under continuous agitation first at 99 °C for 30 min, then a...

ORGANISM(S): Homo sapiens (Human)

2020-05-18 | PXD012317 | Pride

Lymphoma Dlbcl Proteomics Swath-ms Cell of origin

Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.

Not available

S-EPMC5847575 | biostudies-literature

Piette_Hsp70-JPD_P77_VS8_APMS_DIA

This dataset consists of 195 raw MS files, acquired on TripleTOF5600 mass spectrometer operated in Data Independent Acquisition mode. The files are associated with a manuscript in Molecular Cell by Piette et al. that determines the protein-protein and proximity interaction landscape of every human ...

ORGANISM(S): Human Adenovirus 5 (ncbitaxon:28285) Homo Sapiens (ncbitaxon:9606)

2021-01-20 | MSV000086728 | MassIVE

Multi-omic landscaping of human midbrains identifies disease-relevant molecular targets and pathways in advanced-stage Parkinson's disease.

Not available

S-EPMC8797064 | biostudies-literature

Targeted protomics of seeds of healthy and diseased barley

Targeted quantification of proteins of interest present in seeds of healthy and diseased barley measured by SWAT-MS.

ORGANISM(S): Hordeum vulgare (Barley)

2019-06-20 | PXD014093 | Pride

Swat-ms Proteomics Lc-ms/ms

SWATH-MS proteomics of seeds of healthy and diseased barley

Identification and relative quantification of proteins present in seeds of healthy and diseased barley measured by SWATH-MS.