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ProteomicsAn improved TurboID-based proximity labeling pipeline in C. elegans by biochemical depletion of endogenously biotinylated carboxylases
To review an improved proximity-labeling strategy that uses the improved E. coli biotin ligase TurboID to characterize C. elegans protein complexes, the interactome of a presynaptic active zone protein, ELKS-1, was analyzed as proof of principle. A significant constraint on the sensitivity of TurboI...
ORGANISM(S): Caenorhabditis elegans 
2022-09-12 | PXD034639 | Pride
Synapse Imac Apex2 Proximity-dependent protein labeling Hrp Biotinylated carboxylase depletion Turboid Caenorhabditis elegans 
ProteomicsInteractome analysis of C. elegans synapses by TurboID-based proximity labeling
Proximity labeling provides a powerful in vivo tool to characterize the proteome of subcellular structures and the interactome of specific proteins. Using the highly active biotin ligase TurboID, we optimize a proximity labeling protocol for C. elegans. We use this protocol to characterise the prote...
ORGANISM(S): Caenorhabditis elegans 
2021-09-15 | PXD027068 | Pride
Interactome caenorhabditis elegans turboid proximity proteomics biotin labeling 
UnknownTurboID-Based Proximity Labeling for In Planta Identification of Protein-Protein Interaction Networks.
Not available
S-EPMC7927212 | biostudies-literature
ProteomicsStudy of interacting proteins of FOXO1 using TurboID-based proximity labeling technology
Based on the TurboID proximity labeling technology, the interacting proteins of FOXO1 were studied and divided into three groups: blank group U251 cells, FOXO1-U251 overexpressing cells, and FOXO1-U251 cells treated with LPS. The three groups of cells were affinity purified by streptomycin magnetic ...
ORGANISM(S): Homo Sapiens 
2022-08-19 | PXD036171 |
ProteomicsDecreasing Protein Biotinylation Background in a Diatom Facilitates Proximity Labeling of the Periplastidial Compartment Proteome
Diatoms are ecologically and industrially significant microalgae, crucial for global carbon fixation and biotechnological applications. Their complex plastid membrane structures, resulting from secondary endosymbiosis, remain poorly characterized, particularly the periplastidial compartment (PPC). P...
ORGANISM(S): Homo Sapiens Oryza Sativa Nicotiana Benthamiana Nannochloropsis Oceanica Thalassiosira Pseudonana Arabidopsis Thaliana Phaeodactylum Tricornutum 
2025-03-14 | PXD061818 |
UnknownTurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity.
Not available
S-EPMC6642208 | biostudies-literature
UnknownPotential application of TurboID-based proximity labeling in studying the protein interaction network in plant response to abiotic stress.
Not available
S-EPMC9426856 | biostudies-literature
UnknownIdentification of STAU1 as a regulator of HBV replication by TurboID-based proximity labeling.
Not available
S-EPMC9156947 | biostudies-literature
ProteomicsTurboID-mediated proximity labeling for screening interacting proteins of FIP37 in Arabidopsis
Proximity labeling (PL) was recently developed to detect protein–protein interactions (PPIs) and members of subcellular multiprotein structures in living cells. Proximity labeling is conducted by fusing an engineered enzyme with catalytic activity, such as biotin ligase, to a protein of interest (ba...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2024-01-26 | PXD043041 | Pride
Proximity labeling (pl)  turboid  protein–protein interactions (ppis)  biotin  m6a  fip37 
ProteomicsEfficient TurboID-based proximate labeling method for identifying terminal sialic acid glycosylation in living cells
TurboID, a mutant biotin ligase, based proximity labeling method is a new efficient technique for recognizing protein-protein interactions and has been successfully applied to living cells. Sialic acids are typically the terminal monosaccharides attached to many glycoproteins and play many important...
ORGANISM(S): Homo Sapiens 
2021-11-04 | PXD029556 |
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