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ProteomicsDevelopment of a Trypanosoma cruzi Strain Typing Assay using MS2 peptide spectral libraries (Tc-STAMS2)
Chagas disease is one of the most important neglected diseases with an estimated number of 12 million infected individuals, the majority living in Central and South America. The Trypanosoma cruzi (T.cruzi) protozoan parasite is the etiological agent of Chagas disease. T.cruzi is highly genetically d...
ORGANISM(S): Trypanosoma cruzi 
2018-03-19 | PXD008088 | Pride
Trypanosoma cruzi  discrete typing units (dtus)  mass spectrometry  spectral matching  strain typing methods 
UnknownAgdbNet - antigen sequence database software for bacterial typing.
Not available
S-EPMC1543660 | biostudies-literature
ProteomicsCardiac amyloidosis typing by S-Trap-based protocol and intensity-based diagnostic algorithm
Proposal of an S-Trap-based proteomics workflow for amyloid typing of EMBs coupled with a scoring algorithm based on protein intensities.The protocol and the algorithm have been validated by the comparison of MS-based diagnosis with immunohistochemistry diagnosis and patient clinical data. The study...
ORGANISM(S): Homo sapiens (Human) 
2026-08-18 | PXD082501 | Pride
Diagnostic algorithm Laser-capture microdissection Cardiac amyloidosis Microproteomics Typing software 
UnknownComparison of classical multi-locus sequence typing software for next-generation sequencing data.
Not available
S-EPMC5610716 | biostudies-literature
ProteomicsQuantification of amyloid protein enrichment by mass spectrometry improves typing of amyloidosis
Amyloidosis typing is crucial to determine the best therapeutic strategy for patients. Since conventional histological techniques often fail, the identification of amyloid precursors by mass spectrometry became the new standard. However, without quantification, selecting the amyloid precursor from p...
ORGANISM(S): Homo sapiens (Human) 
2026-05-25 | PXD039814 | Pride
Proteomics Mass spectrometry Label-free quantification Amyloidosis typing 
UnknownDevelopment of a high-resolution mass-spectrometry-based method and software for human leukocyte antigen typing.
Not available
S-EPMC10175642 | biostudies-literature
UnknownSNIT: SNP identification for strain typing.
Not available
S-EPMC3182885 | biostudies-literature
Unknownhotspot: software to support sperm-typing for investigating recombination hotspots.
Not available
S-EPMC4978934 | biostudies-literature
ProteomicsPrecise diagnosis and typing of early-stage renal immunoglobulin-derived amyloidosis by label-free quantification of parallel reaction monitoring-based targeted proteomics
Untargeted proteomics based precise diagnosis and typing of amyloid deposits are crucial for guiding patient management. However, it may not be suitable for early-stage renal amyloidosis with minor damages. Here, we aimed to develop parallel reaction monitoring (PRM)-based targeted proteomics to ach...
ORGANISM(S): Homo sapiens (Human) 
2023-03-10 | PXD038265 | Pride
Laser microdissection Amyloidosis Kidney Parallel reaction monitoring Targeted proteomics 
UnknownNext generation multilocus sequence typing (NGMLST) and the analytical software program MLSTEZ enable efficient, cost-effective, high-throughput, multilocus sequencing typing.
Not available
S-EPMC4374426 | biostudies-literature
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