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In this work, we developed an ultra-sensitive CE-MS/MS method for bottom-up proteomics analysis of limited samples, down to sub-nanogram levels of total protein. Analysis of 880 pg and 88 pg of HeLa protein digest standard by CE-MS/MS yielded ~1,100±46 and ~160±59 proteins, respectively, demonstrati...
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD027226 | Pride
Epitope detection sensitivity remains a primary bottleneck in mass spectrometry (MS)-based immunopeptidomics, as conventional discovery-based workflows such as data-dependent (DDA) and data-independent acquisition (DIA) frequently lack the sensitivity required to detect ultra-low abundant targets. W...
ORGANISM(S): Homo sapiens (Human) 
2026-09-14 | PXD074199 | Pride
Epitope detection sensitivity remains a primary bottleneck in mass spectrometry (MS)-based immunopeptidomics, as conventional discovery-based workflows such as data-dependent (DDA) and data-independent acquisition (DIA) frequently lack the sensitivity required to detect ultra-low abundant targets. W...
ORGANISM(S): Homo Sapiens Human Papillomavirus 16 
2026-08-27 | PXD074373 | panorama
Orbitrap Astral mass spectrometry driven data-independent acquisition (DIA) strategy enables deep profiling in shotgun proteomics and is increasingly adopted in single-cell proteomics (SCP). However, the high proportion of missing values reported by existing DIA software remains a bottleneck for sen...
ORGANISM(S): Homo Sapiens Saccharomyces Cerevisiae 
Temporal profiling of proteolytic cleavage during apoptosis.
ORGANISM(S): Homo sapiens (Human) 
2018-01-24 | PXD006594 | Pride
Enrichment of N-terminal peptides using HPLC-based ChaFRADIC and the novel tip-based ChaFRAtip method.
ORGANISM(S): Homo sapiens (Human) 
2018-01-24 | PXD006595 | Pride
Background and Aims: Colorectal adenomas (CRAs) are precursor lesions that can progress to adenocarcinomas. Current clinical guidelines categorize patients into risk groups based on adenoma characteristics observed during index colonoscopy, but this may lead to overtreatment. Our aim was to establis...
ORGANISM(S): Homo sapiens (Human) 
2024-08-04 | PXD046999 | Pride
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