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ProteomicsProteomic insights into ulvan degradation by the marine Flavobacterium Formosa agariphila
The marine Flavobacterium Formosa agariphila KMM 3901T is able to use a broad range of different carbohydrates as growth substrates. This is reflected in the strain’s repertoire of 13 polysaccharide utilization loci (PUL) in total. One PUL – termed as PUL H – is responsible for ulvan degradation, wh...
ORGANISM(S): Formosa agariphila KMM 3901 
2019-07-25 | PXD009299 | Pride
Flavobacterium Proteome Formosa agariphila 
ProteomicsGrazing-resistance, antibiotic production and internal carbon cycling are characteristics for bacteria that prevail in long-term enclosure experiments
Enclosure experiments are frequently used to investigate the impact of changing environmental conditions on microbial assemblages. Yet, the question how individual members of bacterial communities respond to challenges posed by the incubation itself remained unanswered. We used metaproteomic profili...
ORGANISM(S): Eukaryota (eucaryotes) Bacteria Viruses 
2019-07-09 | PXD011160 | Pride
Lc-msms Metaproteome Baltic sea Enclosure experiments 
ProteomicsUtilization of alpha- and beta-mannan by marine Flavobacteriia
About one half of the global, biogenic carbon dioxide fixation into organic matter is driven by microscopic algae in the surface oceans. These microalgal activities generate, among other molecules, polysaccharides that are food for and recycled by bacteria with polysaccharide utilization loci (PULs)...
ORGANISM(S): Leeuwenhoekiella sp. MAR_2009_132 
2018-10-17 | PXD009066 | Pride
Leeuwenhoekiella Marine Mannan Polysaccharide 
ProteomicsUtilization of alpha- and beta-mannan by marine Flavobacteriia
About one half of the global, biogenic carbon dioxide fixation into organic matter is driven by microscopic algae in the surface oceans. These microalgal activities generate, among other molecules, polysaccharides that are food for and recycled by bacteria with polysaccharide utilization loci (PULs)...
ORGANISM(S): Salegentibacter sp. Hel_I_6 
2018-10-17 | PXD009080 | Pride
Leeuwenhoekiella Marine Proteomics Polysaccharide Degradation Salegentibacter 
ProteomicsHyper-specialized Bacteroidetes selfishly compete for laminarin in microalgal blooms
Laminarin is a major storage polysaccharide in phytoplankton and an important carbon and energy source for marine microbes. How microbes compete for this labile polysaccharide in nature remains unclear. Here we investigated metaproteomes and metagenomes of bacterioplankton during four consecutive al...
ORGANISM(S): Formosa sp. Hel1_33_131 
2018-07-31 | PXD007934 | Pride
Marine Formosa Laminarin degradation Bacteroidetes 
UnknownExploiting fine-scale genetic and physiological variation of closely related microbes to reveal unknown enzyme functions.
Not available
S-EPMC5546043 | biostudies-literature
UnknownIndividual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations.
Not available
S-EPMC6643244 | biostudies-literature
UnknownPolysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans.
Not available
S-EPMC6298971 | biostudies-literature
UnknownNiches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom.
Not available
S-EPMC4438327 | biostudies-literature
ProteomicsLentimonas catalyze the degradation of complex sulfated fucans in the ocean
Brown algae synthesize various polysaccharides that are ultimately catabolized by marine heterotrophic bacteria. Complex cell wall polysaccharides such as sulfated fucans are considered recalcitrant to microbial degradation and their pathways remain elusive. The branched structure of fucans sterical...
ORGANISM(S): Lentimonas 
2021-01-20 | PXD015328 | Pride
Lc-ms/ms Sulfated fucans Lentimonas 
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