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TranscriptomicsIdentification of RNAs that are physically and functionally associated with RNase P
Numerous RNAs copurify with RNase P and are affected by temperture sensitive mutations in conserved residues with the essential RNA and protein subunits. Specifically, RNase P physically interacts with ribosomal protein mRNAS and the intron-encoded box C/D snoRNAs. Keywords: RNA copurification, tem...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-01 | E-GEOD-10514 | biostudies-arrayexpress
ProteomicsC. elegans as a model for inter-individual variation in metabolism
Fox BW, Ponomarova O, Lee YU, Zhang G, Giese EG, Walker M, Roberto NM, Na H, Reis-Rodrigues P, Curtis BJ, Kolodziej AR, Crombie TA, Zdraljevic S, Yilmaz LS, Andersen EC, Schroeder FC, Walhout AJM (2022) C. elegans as a model for inter-individual variation in metabolism
ORGANISM(S): Caenorhabditis Elegans (ncbitaxon:6239) 
2021-07-13 | MSV000087810 | MassIVE
TranscriptomicsTranscription profiling of human haptocytes infected with plasmodium reveals circumsporozoite protein promotes the development of the liver stages of the Parasite
The liver stages of malaria sporozoites develop in the hepatocyte cytoplasm inside a parasitophorous vacuole (PV). The circumsporozoite (CS) protein, the major surface protein of sporozoites, traverses the PV membrane and enters the cytoplasm and nucleus of hepatocytes. CS export into the cytoplasm ...
ORGANISM(S): Homo sapiens 
2008-06-16 | E-GEOD-8784 | biostudies-arrayexpress
UnknownEvolutionary Comparisons of Chelonid Alphaherpesvirus 5 (ChHV5) Genomes from Fibropapillomatosis-Afflicted Green (Chelonia mydas), Olive Ridley (Lepidochelys olivacea) and Kemp's Ridley (Lepidochelys kempii) Sea Turtles.
Not available
S-EPMC8465875 | biostudies-literature
ProteomicsConstruction, debugging and iterative redesign of synXVI, a 903-kb synthetic chromosome of Saccharomyces cerevisiae
Assembly and debugging of the 902,994-bp synthetic Saccharomyces cerevisiae chromosome synXVI of the Sc2.0 project is described. Application of the CRISPR D-BUGS protocol identified defective loci, which were modified to improve sporulation and recover wild-type like growth when grown on glycerol as...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2025-05-07 | PXD058199 | Pride
Yeast 2.0 Scramble Synthetic genome Yeast 
TranscriptomicsComparative transcriptomics of Central Asian Vitis vinifera accessions reveals distinct defense strategies against powdery mildew
Grape powdery mildew (PM), caused by the biotrophic ascomycete Erysiphe necator, is a devastating fungal disease that affects most Vitis vinifera cultivars. We have previously identified a panel of V. vinifera accessions from Central Asia with partial resistance to PM that possess a Ren1-like local ...
ORGANISM(S): Vitis vinifera subsp. silvestris 
2015-07-20 | E-GEOD-67191 | biostudies-arrayexpress
ProteomicsQuantitative proteomic analysis of hippocampal tissues from mice treated with a CK1δ/ε inhibitor
Hippocampal tissues from 3xTg-AD mice treated with a CK1δ/ε inhibitor or vehicle, and non-transgenic mice treated with vehicle, were harvested and processed for proteomic analysis using label-free quantification.
ORGANISM(S): Mus musculus (Mouse) 
2019-07-30 | PXD012281 | Pride
Proteomics Lfq Mouse Lc-ms/ms 
ProteomicsEffect of Edurans secretome of human microbiome
A rapid ex vivo microbiome assay and metaproteomics approach was used for evaluating the impacts of E. durans derived secretome on a human gut microbiome cultured in vitro.
ORGANISM(S): metagenome 
2024-01-31 | PXD040751 | Pride
Probiotics Microbiome Metaproteomics 
ProteomicsEvaluate gut microbiome biobanking
A rapid ex vivo microbiome assay and metaproteomics approach was used for rapid evaluation of the cultivability of bio-banked live microbiota, which shows minimal detrimental influences of long-term freezing in deoxygenated glycerol buffer on the cultivability of fecal microbiota.
ORGANISM(S): human gut metagenome 
2022-02-16 | PXD028857 | Pride
Freezing Microbiome Biobanking Metaproteomics 
ProteomicsEffects of SAHA on human gut microbiome
The human stool samples were collected and processed for in vitro culturing under anaerobic condition using rapidAIM assay with or without SAHA, an lysine deacetylase inhibitor, for evaluating the effects of SAHA on human gut microbiome. Metaproteomics were used to analyze the microbiome composition...
ORGANISM(S): gut metagenome 
2022-03-01 | PXD016388 | Pride
Metaproteomics Microbiome 
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