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ProteomicsProteomic and Phosphoproteomic Analysis of Pediatric Familial Adenomatous Polyposis
Polyps and non-polyp mucosal specimens were harvested from pediatric Familial Adenomatous Polyposis patients. The proteome and phosphoproteome of each sample was then analyzed using the tandem mass tag system on an Orbitrap Eclipse Tribrid mass spectrometer followed by data analysis with MaxQuant, ...
ORGANISM(S): Homo sapiens (Human) 
2026-04-27 | PXD061190 | Pride
Familial adenomatous polyposis Polyps Proteomic Phosphoproteomic Mucosa Tandem mass tag Quantitative proteomics Pediatric 
ProteomicsMudPIT analysis of HIV-1 Vpr-asssociated proteins from the permissive CEM.SS human T4-lymphoblastoid cell line
CEM.SS-iH1.Vpr cells expressing a tandem HA-FLAG- epitope-tagged HIV-1 NL4-3 Vpr (hfa-H.Vpr) under control of the Lenti-X Tet-On 3G Inducible Expression System (Clontech), and control CEM.SS cells (3x105 cells/ml, 4 liters), were induced with doxycycline (0.1ug/ml) for 9 hours. Whole cell extracts w...
ORGANISM(S): Hiv-1 Vector Pnl4-3 (ncbitaxon:151458) Homo Sapiens (ncbitaxon:9606) 
2016-03-24 | MSV000079605 | MassIVE
ProteomicsNovel spliceosomal SF3B component in SAGA functions in transcriptional coactivation
MudPIT analyses of novel spliceosomal SF3B component in SAGA complex Stable Drosophila S2 cell lines expressing SF3B5 (CG11985, NP_652189.1), U2B (SNF; CG4528, NP_511045.1), Ada2b-PB (CG9638, NP_001027151.1), Spt3 (CG3169, NP_650146.1), Spt20 (CG17689, NP_648659.2), ATXN7 (CG9866, NP_722803.1), Ada1...
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) 
2016-03-21 | MSV000079597 | MassIVE
Proteomics,MultiomicsAP-MS MudPIT run of yeast R2TP complex
File name explanation: Sc_Rtt101_TAP_P1_Ti_101: Sc = Saccharomyces cerevisiae (specie) Rtt101 = bait protein TAP = tag L1 = lab instrument name(LTQ1) P1 = biological replicate 1 Ti = LysC+Trypsin digestion 101 = MudPIT run 1 from 1st technical replicate rvb1_his_sf21_E1_P1_Ti_101: Sf21 = Spodopt...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
MSV000079332 | MassIVE
Proteomics,MultiomicsAP-MS MudPIT run of yeast R2TP complex
File name explanation: Sc_Rvb1_TAP_P1_Ti_101: Sc = Saccharomyces cerevisiae (specie) Rvb1 = bait protein TAP = tag L1 = lab instrument name(LTQ1) P1 = biological replicate 1 Ti = LysC+Trypsin digestion 101 = MudPIT run 1 from 1st technical replicate rvb1_his_sf21_E1_P1_Ti_101: Sf21 = Spodoptera ...
ORGANISM(S): Spodoptera Frugiperda (ncbitaxon:7108) Saccharomyces Cerevisiae (ncbitaxon:4932) 
2015-05-31 | MSV000079137 | MassIVE
ProteomicsHalo-SPIN1_stable-cell-line_Halo-AP-MudPIT
Halo-SPIN1 stable cell line clone #9 & #11 in 293FRT cells Blank 293FRT control Halo purification Lys-C;Trypsin LTQ MudPIT
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-12-11 | MSV000084679 | MassIVE
ProteomicsHalo-C11orf84_transient-transfection_Halo-AP-MudPIT
Transient transfection 293FRT cells Halo-C11orf84 and Halo-SNAP control Halo Purification Lys-C;Trypsine LTQ-MudPIT
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-12-11 | MSV000084678 | MassIVE
ProteomicsHalo-SPIN1/SNAP-SPINDOC SNAP-Halo-SCAP E1/UB2/E2-MudPIT
Halo-SPIN1 SNAP-SPINDOC Seriel capture affinity purified E1;UB2;E2 MudPIT
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-12-17 | MSV000084713 | MassIVE
ProteomicsHalo-SPIN1/SNAP-SPINDOC SNAP-Halo-SCAP E2-DSSO-XL
Halo-SPIN1 SNAP-SPINDOC Seriel Capture Affinity Purified E2; on-beads DSSO crosslinking ms1/ms2/ms3 PD export (combined)
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-12-18 | MSV000084719 | MassIVE
Proteomics,MultiomicsMudPIT analyses of the proteins co-purified with Halo-tagged Human HNRNP proteins from HEK293T cells with and without RNAse
Plasmids encoding full-length open-reading frames (ORF) of heterogeneous nuclear ribonucleoproteins fused to a HaloTag (HT) were transfected in human HEK293T cells in biological duplicates. The expressed proteins were: HNRNPA0 (NM_006805; NP_006796.1), HNRNPA1 (NM_002136; NP_002127.1), HNRNPD (NM_00...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-04-18 | MSV000079669 | MassIVE
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