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ProteomicsMass Dynamics 1.0: A streamlined, web-based environment for analyzing, sharing and integrating Label-Free Data
Label Free Quantification (LFQ) of shotgun proteomics data is a popular and robust method for the characterization of relative protein abundance between samples. Many analytical pipelines exist for the automation of this analysis and some tools exist for the subsequent representation and inspection ...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2022-04-13 | PXD028038 | Pride
Maxquant Benchmarking Label-free quantification Web-based software tool Automated data analysis 
ProteomicsVDAC2 ligands selectively and potently block BAK-mediated apoptosis to allow long-term clonogenic cell survival
This study aimed to characterise the protein that a novel compound binds to, thus promoting its ability to inhibit BAK apoptotic activity.
ORGANISM(S): Homo sapiens (Human) 
2019-10-11 | PXD013129 | Pride
Compound target id 
ProteomicsMenstrual fluid factors facilitate tissue repair: Identification and functional action in endometrial and skin repair
Repair after damage is essential for tissue homeostasis. Post-menstrual repair of the uterine endometrium is a unique cyclical manifestation of rapid, scar-free, tissue repair taking ~3-5 days. Skin repair post-wounding is slower (~2 weeks) and, in the case of chronic wounds, takes months/years to r...
ORGANISM(S): Homo sapiens (Human) 
2018-07-30 | PXD007234 | Pride
Human Woulnd healing factors 
ProteomicsUniversal Solid-Phase Protein Preparation (USP3) for bottom-up and top-down proteomics
Selecting a sample preparation strategy for mass spectrometry-based proteomics is critical to the success of quantitative workflows. Here we present a universal, solid-phase protein preparation (USP3) method which is rapid, robust and scalable, facilitating high-throughput protein sample preparation...
ORGANISM(S): Homo sapiens (Human) 
2019-06-05 | PXD011169 | Pride
Top-down proteomics Universal solid-phase protein preparation Bottom-up proteomics Intact mass spectrometry 
ProteomicsDiscovery and validation of novel protein biomarkers in ovarian cancer patient urine
Diagnosis of ovarian cancer at an early stage is the most important determinant of survival. Thus, there is a clear need for novel biomarkers to improve diagnostic and prognostics that may better inform on therapeutic strategies. We have conducted a discovery study using label-free quantitative mass...
ORGANISM(S): Homo sapiens (Human) 
2018-02-15 | PXD007962 | Pride
Urine Prm Ovarian cancer Lfq He4 Parallel reaction monitoring Label free quantitation 
ProteomicsQuantitative proteomics analysis reveals a protein concentration effect of neat urine compared to urine EVs
Research in urine proteomics and extracellular vesicles (EV) has gained increasing traction in biomarker research. Previous studies have suggested that both can be affected by urine protein concentration, however, there is a lack of data on the combined effect on urine proteomics. Here, we assessed ...
ORGANISM(S): Homo sapiens (Human) 
2025-07-11 | PXD056692 | Pride
Urine extracellular vesicles Proteinuria Kidney biomarkers Urine proteomics 
ProteomicsTargeted Feature Detection and Extraction
Missed identifications of peptides in data-dependent acquisition (DDA) proteomics experiments is an obstacle n the precise determination of which proteins are present in a sample and their relative abundance. Efforts pular analysis workfl raw data to transfer a pehtiraw identifiher. Another approach...
ORGANISM(S): Homo sapiens (Human) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) 
2022-03-07 | PXD030706 | Pride
Feature detection Timstof Ion mobility Peptide identification Mass spectrometry 
UnknownIncidence and phenotypes of childhood-onset genetic epilepsies: a prospective population-based national cohort.
Not available
S-EPMC6658850 | biostudies-literature
UnknownStructural mapping of polyclonal IgG responses to HA after influenza virus vaccination or infection.
Not available
S-EPMC11898601 | biostudies-literature
UnknownIdentification of the alpha2-delta-1 subunit of voltage-dependent calcium channels as a molecular target for pain mediating the analgesic actions of pregabalin.
Not available
S-EPMC1859964 | biostudies-literature
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