White Michael A MA

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Unknown (178)
Transcriptomics (25)
Genomics (21)
Proteomics (18)
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Genomic (3)
Models (1)

Organisms

Homo sapiens (29)
Alphavirus (13)
Archaea (13)
Bacteria (13)
Betaherpesvirinae (13)
Borrelia (13)
Botrytis cinerea (13)
Chlorella vulgaris (13)
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Enterovirus A71 (13)
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Hepatitis B virus (13)
Human betaherpesvirus 5 (13)
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Japanese encephalitis virus group (13)
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Miscanthus x giganteus (13)
Mycobacterium tuberculosis (13)
Mus musculus (6)
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Caenorhabditis elegans (1)
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Drosophila melanogaster (1)
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Repository

biostudies-arrayexpress (28)
EGA (18)
pride (13)
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Tissue

Cell culture (4)
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Saliva-secreting gland (1)
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Disease

High Grade Ovarian Serous Adenocarcinoma (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
COVID-19 (1)
Disease free (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (10)
Mass spectrometry (8)
NMR spectroscopy (2)
SWATH MS (2)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
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Instrument Platform

LTQ Orbitrap Velos (3)
LTQ Orbitrap Elite (2)
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Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Illumina HiSeq 2500 (1)
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Orbitrap Exploris 480 (1)
Q Exactive (1)
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Orbitrap Fusion (Thermo Fisher Scientific)_negative (1)
Orbitrap Fusion (Thermo Fisher Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Nuclear Magnetic Resonance (NMR) (1)
Liquid Chromatography MS - (1)
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Nuclear Magnetic Resonance (NMR) - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2014 (5)
2010 (5)
2020 (5)
2015 (4)
2013 (4)
2019 (4)
2023 (4)
2021 (4)
2018 (3)
2012 (3)
2011 (3)
2025 (3)
2024 (2)
2004 (2)
2022 (2)
2016 (1)
2008 (1)
2005 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1IGU5 (2)
A1L020 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:17368 (5)
CHEBI:15891 (4)
CHEBI:73024 (4)
CHEBI:15428 (4)
CHEBI:16449 (4)
CHEBI:16737 (4)
CHEBI:16919 (4)
CHEBI:15354 (4)
CHEBI:17822 (3)
CHEBI:17126 (3)
CHEBI:27570 (3)
CHEBI:18186 (3)
CHEBI:16811 (3)
CHEBI:17234 (3)
CHEBI:28300 (3)
CHEBI:16708 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:28044 (3)
CHEBI:1148 (3)
CHEBI:27266 (3)
CHEBI:16704 (3)
CHEBI:17724 (3)
CHEBI:25094 (3)
CHEBI:28867 (3)
CHEBI:17568 (3)
CHEBI:78320 (3)
CHEBI:17154 (3)
CHEBI:30769 (3)
CHEBI:6804 (2)

Metabolite Name

Taurine (3)
Xanthine (3)
Creatine (3)
Trans-Aconitate (2)
Acetate (2)
L-Histidine (2)
Choline (2)
L-Arginine (2)
Alanine (2)
N-Acetyl-L-alanine (2)
Cis-Aconitate (2)
Uridine (2)
Creatinine (2)
Trimethylamine N-oxide (2)
Hypoxanthine (2)
Theronine (1)
Adenosylhomocysteine (1)
13S-hydroperoxy-9Z,11E-octadecadienoic acid (1)
2,4,6-trimethyl-2Z-tetracosenoic acid (1)
2-Decenedioic acid (1)
2-hydroxy-15-tetracosenoic acid (1)
2-hydroxy-nonanoic acid (1)
2-hydroxy-undecanoic acid (1)
2-Methyl-3-hydroxybutyricacid (1)
3-Methyladipicacid (1)
7-Prenyloxy-3',4'-dimethoxyisoflavone (1)
Dihydrocamalexate (1)
Heptanedioic acid (1)
2-Palmitoleoyl-glycerol (1)
S-9-methylthiononylhydroximoyl-L-cysteine (1)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (17)
ChIP-seq (3)
RNA-seq of coding RNA (3)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (27)
2022 (27)
2021 (25)
2024 (23)
2025 (15)
2020 (12)
2015 (9)
2018 (8)
2016 (8)
2013 (8)
2010 (8)
2019 (7)
2014 (6)
2012 (6)
2011 (4)
2026 (3)
2017 (3)
2008 (2)
2004 (2)
2009 (2)
2005 (1)

Lab affiliation

Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (4)
Department of Biological Engineering, Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (3)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Department of Biological Engineering Massachusetts Institute of Technology Cambridge MA 02139, Koch Institute for Integrative Cancer Research Massachusetts Institute of Technology Cambridge MA 02142 USA, Center for Precision Cancer Medicine Massachusetts Institute of Technnology Cambridge MA 02142 USA (1)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (lab head) (1)
Department of Chemistry, Stanford University (1)
Department of Microbiology and Immunology University of Maryland School of Medicine USA (1)

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Transcription profiling of Drosophila developmental time series

Michelle N. Arbeitman, Eileen E. M. Furlong, Farhad Imam, Eric Johnson, Brian H. Null, Bruce S. Baker, Mark A. Krasnow, Matthew P. Scott, Ronald W. Davis and Kevin P. White. Gene Expression During the Life Cycle of Drosophila melanogaster, Science, 297: 2270-2275, 2002. This work can be accessed fro...

ORGANISM(S): Drosophila melanogaster

2004-11-06 | E-FLYC-6 | biostudies-arrayexpress

Gallaher2018 - Tumor–Immune dynamics in multiple myeloma

The paper describes a model on the key components for tumor–immune dynamics in multiple myeloma. Created by COPASI 4.25 (Build 207) This model is described in the article: Methods for determining key components in a mathematical model for tumor–immune dynamics in multiple myeloma Jill Gallaher, Ka...

2024-09-02 | BIOMD0000000743 | BioModels

Immuno-oncology

A Proposed Roadmap for Parkinson's Disease Proof of Concept Clinical Trials Investigating Compounds Targeting Alpha-Synuclein.

Not available

S-EPMC6398545 | biostudies-literature

Quantifying the short-term effects of air pollution on health in the presence of exposure measurement error: a simulation study of multi-pollutant model results.

Not available

S-EPMC8385952 | biostudies-literature

Metabolomics identifies multiple candidate biomarkers to diagnose and stage human African trypanosomiasis

Treatment for human African trypanosomiasis is dependent on the species of trypanosome causing the disease and the stage of the disease (stage 1 defined by parasites being present in blood and lymphatics whilst for stage 2, parasites are found beyond the blood-brain barrier in the cerebrospinal flui...

2018-01-24 | MTBLS413 | MetaboLights

Dual Functions of TAF7L in Adipocyte Differentiation

The diverse transcriptional mechanisms governing cellular differentiation and development of mammalian tissue remains poorly understood. Here we report that TAF7L, a paralogue of TFIID subunit TAF7, is enriched in adipocytes and mouse white fat tissue (WAT). Depletion of TAF7L reduced adipocyte-spec...

ORGANISM(S): Mus musculus

2013-01-07 | E-GEOD-41937 | biostudies-arrayexpress

NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (age >45 yrs old) from the REGARDS

Benign ethnic neutropenia (BEN) is a clinical condition more commonly observed in African-Americans. It is characterized by a relative reduction in neutrophil count by about 1000 cells per microliter, leading to a decrease in total leukocyte count by similar decrement. Previous reports of this co...

phs000507.v1.p1 | EGA

Phosphoproteomics identifies microglial Siglec-F inflammatory response during neurodegeneration

This study sought to explore phosphoproteome signaling dysregulation in different models of neurodegeneration. We collected phosphotyrosine, MAPK/CDK substrates, global phosphoproteome, and protein expression data from hippocampus and/or cortex tissue from each model. Tryptic peptides were multiplex...

ORGANISM(S): Mus musculus (Mouse)

2020-11-09 | PXD018757 | Pride

Tau p301s Siglec-f Mouse 5xfad Bv-2 Phosphotyrosine Alzheimer's disease Ck-p25 Lc-ms/ms

Protocol for a multi-center randomized controlled trial to evaluate the benefits of exercise incentives and corticosteroid injections in osteoarthritis of the knee (MOVE-OK).

Not available

S-EPMC9327347 | biostudies-literature

Understanding monogenic Parkinson's disease at a global scale.

Not available

S-EPMC10962747 | biostudies-literature

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