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ProteomicsMetabolic characterization of two white-rot fungi in diverse cultivation environments reveals biotechnologically relevant biosynthetic pathways
Two white-rot fungi, Trametes versicolor and Gelatoporia subvermispora, were cultivated in different environments - agitation and static incubation modes and variations in the level of antioxidants - during the conversion of a lignin-related aromatic compound and cellobiose. Both incubation mode and...
ORGANISM(S): Gelatoporia Subvermispora (ncbitaxon:42742) Trametes Versicolor (ncbitaxon:5325) 
2024-08-05 | MSV000095519 | MassIVE
TranscriptomicsDevelopmental and metabolic plasticity of ripe Semillon grape berries in response to Botrytis cinerea during noble rot
Noble rot results from atypical infections of ripe grape berries by Botrytis cinerea. Unlike bunch rot, noble rot promotes favorable changes in grape berries and accumulation of secondary metabolites that enhance wine grape quality. Noble rot-infected berries of Sémillon, a white-skinned variety, w...
ORGANISM(S): Vitis vinifera 
2015-10-12 | E-GEOD-67932 | biostudies-arrayexpress
ProteomicsTwo closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, produce orthologous plant cell wall degrading enzymes for spruce wood degradation
Unique ability of basidiomycete white rot fungi to degrade all components of plant cell walls makes them indispensable organisms in global carbon cycle. In this study, we analyzed proteomes of two closely related white rot fungi, Obba rivulosa and Gelatoporia subvermispora, while growing on solid sp...
ORGANISM(S): Ceriporiopsis subvermispora Obba rivulosa 
2022-08-08 | PXD030609 | Pride
Cazymes White rot fungi Obba rivulosa Gelatoporia subvermispora Proteome Lignin biodegradation Lc-ms/ms 
ProteomicsIntracellular pathways for lignin catabolism in white-rot fungi
White-rot fungi (WRF), considered the most efficient organisms at degrading organic carbon in the biosphere, are found in plant cell wall lignin biopolymer. We employ multi-omics to demonstrate that Trametes versicolor and Gelatoporia subvermispora funnel lignin-derived aromatic compounds into centr...
ORGANISM(S): Trametes versicolor Ceriporiopsis subvermispora 
2021-02-10 | PXD019839 | Pride
White-rot fungi Aromatic compound Lignin Multi-omics Poplar Systems biology 
ProteomicsShotgun proteomic analysis of the Methionine oxidation of carbohydrate-active enzymes during white-rot wood decay.
Methionine oxydation level was monitored by tandem mass spectrometry for secreted proteins and intracellular proteins from the white-rot fungus Pycnoporus cinnabarinus grown on aspen wood.
ORGANISM(S): Pycnoporus <basidiomycete fungi> 
2024-11-06 | PXD046271 | Pride
Methionine oxidation Wood decay Carbohydrate-active enzymes Plant cell wall Redox proteomics Fungi 
ProteomicsThe secretome of the white-rot basidiomycete Abortiporus biennis LGAM 436 can cause significant modifications to polystyrene structure
This study focused on investigating the biocatalytic potential of the white-rot basidiomycete Abortiporus biennis LGAM 436 to modify the structure of different types of PS, including amorphous film with atactic stereochemistry and commercial EPS foam. The selection of this specific strain was mainly...
ORGANISM(S): Abortiporus biennis 
2025-04-24 | PXD058977 | Pride
Polystyrene Lfq Plastic pollution Biodegradation Abortiporus Fungi White-rot Secretome Quantms Dda 
ProteomicsShotgun proteomic analysis of the secretomes from white-rot fungus Coriolopsis gallica in presence or absence of levofloxacin.
Proteomic and proteogenomics analyses of secretomes from the white-rot fungus Coriolopsis gallica in presence or absence of levofloxacin in order to identify the proteins involved in the degradataion of the fluoroquinolone.
ORGANISM(S): Coriolopsis gallica 
2022-10-13 | PXD035019 | Pride
Fluoroquinolone Proteomics Antibiotic Exoproteome Fungus Degradative enzymes Secretome 
GenomicsIntracellular pathways for lignin catabolism in white-rot fungi
Intracellular pathways for lignin catabolism in white-rot fungi
PRJNA636664 | ENA
ProteomicsElucidating lignin catabolism in white rot fungi
We propose to elucidate new metabolic pathways in fungi - with a special focus on white rot fungi (WRF)- involved in the catabolism of lignin-derived aromatic compounds. Basidiomycete fungi, in particular WRF, are the most efficient organisms for the depolymerization and mineralization of lignin to ...
ORGANISM(S): Ceriporiopsis Subvermispora Trametes Versicolor 
2024-05-16 | MSV000094781 | MassIVE
TranscriptomicsThe integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown.
White-rot basidiomycete fungi are potent degraders of plant biomass with the ability to mineralize all lignocellulose components. Recent comparative genomics studies showed that these fungi use a wide diversity of enzymes for wood degradation. In order to improve our understanding on the enzymatic m...
ORGANISM(S): Trametes coccinea 
2017-05-21 | GSE94878 | GEO
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