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TranscriptomicsGene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
Escherichia coli O157:H7 has caused serious outbreaks of foodborne illness via transmission in a variety of food vehicles, including unpasteurized apple juice, dried salami, and spinach. To understand how this pathogen responds to the multiple stresses of the food environment, we compared global tr...
ORGANISM(S): Escherichia coli 
2010-05-25 | E-GEOD-11052 | biostudies-arrayexpress
TranscriptomicsIdentification of genes regulated by gadE in E. coli O157:H7
Integrating laterally acquired virulence genes into the backbone regulatory network is important for the pathogenesis of Escherichia coli O157:H7, which has captured many virulence genes through horizontal transfer during evolution. GadE is an essential transcriptional activator of glutamate decarbo...
ORGANISM(S): Escherichia coli 
2010-05-18 | E-GEOD-13132 | biostudies-arrayexpress
UnknownMapping full-length porcine endogenous retroviruses in a large white pig.
Not available
S-EPMC116122 | biostudies-literature
TranscriptomicsIdentification of differentially expressed genes between clinical and bovine-biased Escherichia coli O157:H7 genotypes
Escherichia coli O157:H7 strains have been classified into different genotypes based on the presence of specific shiga toxin-encoding bacteriophage insertion sites. Genotypes that are predominant in clinical isolates are named clinical genotypes and those that are isolated mostly from bovine source...
ORGANISM(S): Escherichia coli 
2010-06-19 | E-GEOD-15783 | biostudies-arrayexpress
TranscriptomicsThe RpoN Regulon of Escherichia coli O157:H7
There is increasing evidence to support a role for sigma factor 54 (RpoN) in the regulation of stress resistance factors and protein secretion systems important to bacterial transmission and pathogenesis. In enterohemorrhagic E. coli O157:H7, acid resistance and type III secretion are essential det...
ORGANISM(S): Escherichia coli O157:H7 str. Sakai 
2009-08-08 | E-GEOD-17467 | biostudies-arrayexpress
TranscriptomicsGenomic diversity of Escherichia isolates from diverse habitats
Comparative genomic hybridization between Escherichia coli strains to determine core and pan genome content of clinical and environmental isolates Two color experiment, Escherichia coli Sakai (reference), clinical and environmental Escherichia coli strains (testers): At least two replicates includin...
ORGANISM(S): Escherichia sp. TW14265 
2012-08-30 | E-GEOD-39667 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of 2 outbreak strains of E. coli O157:H7 following exposure to epithelial cells
Two outbreak strains of E. coli O157:H7 differ phylogenetically, in gene content, and in epidemiological characteristics. The working hypothesis in this experiment was that these strains will also differ in the transcription of shared virulence genes. Indeed, following a 30 minute exposure to epithe...
ORGANISM(S): Escherichia coli 
2010-05-05 | E-GEOD-17389 | biostudies-arrayexpress
UnknownSequence diversity of the Escherichia coli H7 fliC genes: implication for a DNA-based typing scheme for E. coli O157:H7.
Not available
S-EPMC86588 | biostudies-literature
UnknownOutcome prediction models in AQP4-IgG positive neuromyelitis optica spectrum disorders.
Not available
S-EPMC6487334 | biostudies-literature
UnknownPhylogenetic analysis of Clostridium botulinum type A by multi-locus sequence typing.
Not available
S-EPMC2562668 | biostudies-literature
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