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TranscriptomicsTranscription profiling of control and catalase-deficient Arabidopsis (Arabidopsis thaliana) plants
In plants, reactive oxygen species and, more particularly, hydrogen peroxide (H2O2) play a dual role as toxic by-products of normal cell metabolism and as regulatory molecules in stress perception and signal transduction. Peroxisomal catalases are an important sink for photorespiratory H2O2. Using A...
ORGANISM(S): Arabidopsis thaliana 
2005-10-11 | E-MEXP-449 | biostudies-arrayexpress
UnknownBiglycan as a potential regulator of tumorgenicity and immunogenicity in K-RAS-transformed cells.
Not available
S-EPMC9067524 | biostudies-literature
UnknownBiglycan-mediated upregulation of MHC class I expression in HER-2/neu-transformed cells.
Not available
S-EPMC5889282 | biostudies-literature
TranscriptomicsTranscription profiling of Arabidopsis leaf blades sampled throughout development from meristematic to expanding to mature state at 10 different timepoints
Arabidopsis leaf blades were sampled throughout development from meristematic through expanding to mature state at 10 different timepoints. The transcript data can be compared to a kinematic and flowcytometric characterisation of the system.
ORGANISM(S): Arabidopsis thaliana 
2004-09-20 | E-MEXP-144 | biostudies-arrayexpress
ProteomicsSpectral prediction features as a solution for the search space size problem in proteogenomics
Proteogenomics approaches often struggle with the distinction between right and false peptide-to-spectrum matches as the database size enlarges. However, features extracted from tandem mass spectrometry intensity predictors can enhance the peptide identification rate and can provide extra confidence...
ORGANISM(S): Homo sapiens (Human) 
2021-03-26 | PXD022280 | Pride
Proteogenomics  spectrum predictor  nanopore sequencing  ribosome profiling  rna-seq  ms2pip  prosit  intensity features  machine learning  hct116  percolator  maxquant 
ProteomicsPROTEOFORMER 2.0: MS validation
PROTEOFORMER is a pipeline for generating a search space of candidate translation products based on ribosome profiling data. The pipeline was published in 2014, but since then, several features have been added. For this project, the PROTEOFORMER pipeline 2.0 was tested on human HCT116 and Jurkat cel...
ORGANISM(S): Homo sapiens (Human) 
2019-05-03 | PXD011353 | Pride
Jurkat Proteoformer Hct116 Msms 
ProteomicsEffect of rumen-protected methionine on metabolic profile in liver, muscle and blood serum samples of growing German Simmental bulls at restricted protein supply
This study aimed to determine the metabolic response of growing Fleckvieh bulls fed diets low in crude protein (CP) supplemented with rumen-protected methionine (RPM). In total, 69 bulls were assigned to three dietary treatments (n=23/group): Positive control (CON; 13.7% CP; 2.11 g methionine/kg DM...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) 
2023-07-07 | MSV000092367 | MassIVE
UnknownExtended pharmacological thromboprophylaxis and clinically relevant venous thromboembolism after major abdominal and pelvic surgery: international, prospective, propensity score-weighted cohort study.
Not available
S-EPMC11894929 | biostudies-literature
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