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ProteomicsRescue of Escherichia coli auxotrophy by de novo small proteins
Increasing numbers of small proteins with diverse physiological roles are being identified and characterized in both prokaryotic and eukaryotic systems, but the origins and evolution of these proteins remain unclear. Recent genomic sequence analyses in several organisms suggest that new functions en...
ORGANISM(S): Escherichia coli 
2023-03-31 | PXD040161 | Pride
Escherichia coli Rna-binding De novo gene evolution Gene regulation His operon Auxotroph Small proteins 
GenomicsDe novo assembly of 150 Danish genomes reveals rich structural complexity
Most known genetic variation in human genomes has been called from comparison of short reads to the reference genome, an approach biased against finding complex variation. We sequenced 150 individuals from 50 parent-offspring trios with multiple insert-size libraries to very high coverage. We show t...
EGAS00001002108 | EGA
UnknownNext-generation sequencing virulome analysis of a Yersinia enterocolitica subsp. palearctica bioserotype 4/O:3 ST18 isolated from human blood in Brazil.
Not available
S-EPMC9425461 | biostudies-literature
UnknownOptimized De Novo Eriodictyol Biosynthesis in Streptomyces albidoflavus Using an Expansion of the Golden Standard Toolkit for Its Use in Actinomycetes.
Not available
S-EPMC10219347 | biostudies-literature
UnknownDECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data.
Not available
S-EPMC6954660 | biostudies-literature
UnknownAntioxidant, Anti-Inflammatory, and Antibacterial Properties of an Achillea millefolium L. Extract and Its Fractions Obtained by Supercritical Anti-Solvent Fractionation against Helicobacter pylori.
Not available
S-EPMC9598488 | biostudies-literature
UnknownAccurate de novo peptide sequencing using fully convolutional neural networks.
Not available
S-EPMC10693636 | biostudies-literature
ProteomicsMacro-porous Reversed Phase Separation of Proteins Combined with Reversed Phase Separation of Phosphopeptides and Tandem Mass Spectrometry for Profiling the Phosphoproteome of MDA-MB-231 cells
A new method of combining macro-porous reversed phase (mRP) protein fractionation with reversed phase liquid chromatography (RPLC) peptide separation tandem mass spectrometry (MS/MS) is reported for profiling the phosphoproteome of a complex sample. In this method, an mRP-C18 column was used to frac...
ORGANISM(S): Homo sapiens (Human) 
2014-07-24 | PXD000948 | Pride
Phosphoproteome Mrp-rplc Scx-rplc Mda-mb-231 Mass spectrometry 
UnknownBy their genes ye shall know them: genomic signatures of predatory bacteria.
Not available
S-EPMC3603397 | biostudies-literature
UnknownAntiretroviral Drugs Promote Amyloidogenesis by De-Acidifying Endolysosomes.
Not available
S-EPMC6981001 | biostudies-literature
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