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ProteomicsSelective phospohorylation of macrophage differentiation
The differentiation of macrophages from monocytes is a tightly controlled and complex biological process. Although numerous studies have been conducted using biochemical approaches or global gene/protein profiling, the mechanisms of the early stages of differentiation remain unclear. Here we used TH...
ORGANISM(S): Homo sapiens (Human) 
2015-09-02 | PXD002496 | Pride
Macrophage differentiation Phosphoproteome 
ProteomicsTissue specfic proteome quantitation and Temporal proteome profile of Arabidopsis upon ABA exposure using DIA-MS
Use of our recent spectral library, we quantify proteomes of 4 tissue type in arabidopsis, and also the proteomes in response to ABA-treatment. We revealed the temproal profiling of ABA-responding genes.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-09-02 | PXD014032 | Pride
Dia-ms Arabidopsis Aba treatment 
ProteomicsArabidopsis proteome spectral library
We constructed a comprehensive Arabidopsis Spectral Assay library that is useful for DIA/SWATH-MS quantitative proteome analysis.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-06 | PXD012710 | Pride
Dia Tripletof 5600 Swath Arabidopsis Spectral library 
ProteomicsComprehensive Arabidopsis Proteome Spectral Library
We constructed a comprehensive Arabidopsis Spectral Assay library that is useful for DIA/SWATH-MS quantitative proteome analysis.
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2019-11-06 | PXD012708 | Pride
Dia Swath Arabidopsis Spectral library 
ProteomicsNarrow precursor window for DIA-MS enhances protein identification and quantification
Data independent acquistion (DIA) is becoming widely as a method of choice in quantitation proteomics due to its high reproducibility and quantitation accuracy at high-throughput fashion. In this project, we systematically evaluated the effect of the selected precursor mass range for DIA-MS on the p...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2021-10-01 | PXD026965 | Pride
Arabidopsis Data independent acqusition (dia) Lc-ms/ms 
ProteomicsCoral color morphs exhibit distinct microbial and proteomic profiles linked to stress and immune mechanisms in a changing ocean
Understanding the phenotypic plasticity of corals is crucial for uncovering mechanisms of resilience in warming oceans, yet the biological significance of coral color morphs still needs to be explored. Using an innovative multi-omic approach (proteomics, lipidomics, and metabolomics), we provide the...
ORGANISM(S): Pocillopora verrucosa 
2025-09-01 | PXD066612 | Pride
Coral microbiome Pocillopora verrucosa Proteomics Phenotypic plasticity Metabolome 
ProteomicsTranscriptome and proteome studies during the development of barnacle amphitrite
Balanus amphitrite, is the main biofouling organism in marine environments.We identified 65,784 expressed contigs, and a total of 1,387 expressed proteins measured by quantitative proteomics.
ORGANISM(S): Amphibalanus amphitrite (Striped barnacle) (Balanus amphitrite) 
2016-10-06 | PXD004679 | Pride
Barnacle amphitrite Proteome 
ProteomicsProteomics of C. briggsae embryo and larvae
To gain mechanistic insights into the molecular changes of Caenorhabditis briggsae between the two developmental stages: embryo and larvae
ORGANISM(S): Caenorhabditis elegans 
2018-10-11 | PXD005549 | Pride
Embryo Chromatin dynamics Itraq C. briggsae 
ProteomicsA.thaliana - Silique, SC (Zhangetal,scidata2019)
abundance based on Spectral counting, Interaction consistency score: 1.9, Coverage: 35
ORGANISM(S): 3702 
2019-00-00 | 2872091233 | PAXDB
ProteomicsA.thaliana - Root, SC (Zhangetal,scidata2019)
abundance based on Spectral counting, Interaction consistency score: 2.2, Coverage: 35
ORGANISM(S): 3702 
2019-00-00 | 1074583746 | PAXDB
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