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ModelsBarr2016 - All-or-nothing G1/S transition
Barr2016 - All-or-nothing G1/S transition This model is described in the article: A Dynamical Framework for the All-or-None G1/S Transition. Barr AR, Heldt FS, Zhang T, Bakal C, Novák B. Cell Syst 2016 Jan; 2(1): 27-37 Abstract: The transition from G1 into DNA replica...
2024-09-02 | BIOMD0000000646 | BioModels
ProteomicsS-glutathionylation proteome profiling of Streptococcus mutans
S-glutathionylation is an important post-translational modification (PTM) process that targets the protein cysteine thiol by the addition of glutathione (GSH). This modification can prevent proteolysis from over-oxidation of protein cysteine residue during the condition of oxidative or nitrosative s...
ORGANISM(S): Streptococcus mutans UA159 
2020-07-14 | PXD019564 | Pride
S-glutathionylation  streptococcus mutans  post-translational modification 
TranscriptomicsTranscription profiling of human soluble guanylate cyclase-deficient U937 cells exposed to the nitric oxide (NO) donor S-nitrosoglutathione to provide insight into the cGMP-independent effects of NO
NO effects on gene expression, independent of cGMP, were examined globally. Differentiated human U937 cells that lack soluble guanylate cyclase were exposed to Snitrosoglutathione, a NO donor, or glutathione without or with dibutyryl-cAMP (Bt2cAMP). NO regulated 110 transcripts that annotated dispro...
ORGANISM(S): Homo sapiens 
2007-09-11 | E-GEOD-2649 | biostudies-arrayexpress
ProteomicsiTRAQ-based proteomic analysis of style proteins and S-RNase-related proteins in Huanghua and its homozygous S-genotype offspring
We used iTRAQ technology to investigate the protein expression characteristics of S-RNases in S-gene homozygous germplasm. By using MaxQuant to search the raw mass spectrometry data files against the protein database, a total of 30,503 identified spectra, 13,568 peptides, and 4,472 proteins were ide...
ORGANISM(S): Pyrus pyrifolia 
2024-01-26 | PXD043543 | Pride
S-rnase Style Itraq Pyrus Homozygous 
TranscriptomicsTranscriptome analysis of probiotic Lactobacillus casei Zhang during fermentation in soymilk
Lactobacillus casei Zhang is a probiotic bacterium isolated from koumiss in Inner Mongolia of China. Gene expression dynamics of L. casei Zhang during growth in soymilk was investigated in attempt to reveal the mechanisms involved in growth stimulation for growing probiotics in. Comparison of differ...
ORGANISM(S): Lactobacillus casei str. Zhang 
2011-12-31 | E-GEOD-23652 | biostudies-arrayexpress
ProteomicsH2S-mediated S-sulfhydration coordinates autophagy and infection of the rice blast fungus
Hydrogen sulfide (H2S), a potent signaling molecule, regulates cellular activities in plants and mammals through S-sulfhydration, a post-translational modification. The role of H2S and its molecular targets in fungi, however, remain unclear. Our study demonstrates that H2S, synthesized by cystathion...
ORGANISM(S): Oryza sativa (Rice) 
2025-06-12 | PXD063170 | Pride
S-sulfhydration h2s atg18 magnaporthe oryzae 
TranscriptomicsGene expression profile of probiotic Lactobacillus casei Zhang during the late stage of milk fermentation
Lactobacillus casei Zhang is a probiotic bacterium isolated from koumiss in Inner Mongolia of China that has been commercially used as a starter in the manufacture of dairy products. To study the gene expression profiles of L. casei Zhang during growth in milk, a whole-genome microarray was used. Co...
ORGANISM(S): Lactobacillus casei str. Zhang 
2011-12-31 | E-GEOD-24597 | biostudies-arrayexpress
ProteomicsSimultaneous profiling of phosphorylation and S-nitrosylation during maize seed germination
We developed a phosphate-affinity tag-switch (PAT-switch) proteomics workflow enabling simultaneous, site-specific profiling of phosphorylation and S-nitrosylation during maize seed germination.
ORGANISM(S): Zea Mays 
2026-01-21 | PXD073327 |
Metabolomics13(S)-HODE Generated by Rhizopus microsporus var. rhizopodiformis Aggravates MASLD via the Elane-PAR2-SREBP-1c Axis
Abstract Objective:Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD) poses a major public health challenge. Increasing data suggest a role of gut fungi in liver disease, yet their diversity and biological function in MASLD are still poorly understood. Methods:Internal transcribed spac...
2026-09-14 | MTBLS15643 | MetaboLights
ProteomicsSilver binding proteins in S. aureus
The rapid emergence of drug resistant Staphylococcus aureus (S. aureus), in particular, methicillin-resistant S. aureus (MRSA) poses a serious threat to public health globally. Reuse of metal-based antimicrobials stands for one of the most promising strategies to resensitize drug resistant bacteria ...
ORGANISM(S): Staphylococcus aureus 
2021-09-10 | PXD025106 | Pride
Silver-binding protein S. aureus 
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