post-translational modification

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Organisms

Homo sapiens (214)
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Instrument Platform

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UNIPROT ID/AC

4565.Traes_6BL_7799EECBB.1 (3)
4565.Traes_5DL_9E6F66306.2 (3)
A0A3B6LW21_WHEAT (3)
4565.Traes_7AL_F5534777D.1 (3)
4565.Traes_1BL_C86F8C02A.1 (3)
A0A3B6FUU8_WHEAT (3)
4565.Traes_1BL_0D5375344.1 (3)
4565.Traes_5AL_232414653.1 (3)
A0A3B6EF89_WHEAT (3)
4565.Traes_2DS_65A89094D.1 (3)
4565.Traes_7BL_09E7513CB.1 (3)
4565.Traes_1DL_34DA247531.1 (3)
4565.Traes_3B_15FC2C014.1 (3)
4565.Traes_1DS_D1B39A182.1 (3)
A0A3B6AXY6_WHEAT (3)
4565.Traes_2BS_F2A8D87C5.1 (3)
4565.Traes_2BL_E20D7B8CA1.1 (3)
4565.Traes_7DS_4E621A250.2 (3)
4565.Traes_5AL_C3F3E95BC.1 (3)
4565.Traes_6AL_934384210.1 (3)
4565.Traes_7DL_F5534777D.1 (3)
4565.Traes_4AS_F08668B5A.1 (3)
4565.Traes_7DL_CDEB2E55D.1 (3)
4565.Traes_4DL_BF24DFB52.1 (3)
4565.Traes_4DS_DB778297B.1 (3)
P35567 (2)
P24033 (2)
P13473 (1)
P37840 (1)
Q4KLA0 (1)

ENSEMBL ID

ENSG00000170477 (42)
ENSG00000147251 (25)
ENSG00000229353 (23)
ENSG00000247315 (12)
ENSG00000204131 (8)
ENSG00000176092 (2)

CHEBI ID

CHEBI:28044 (3)
CHEBI:30769 (3)
CHEBI:38264 (2)
CHEBI:17822 (2)
CHEBI:25094 (2)
CHEBI:22660 (2)
CHEBI:18186 (2)
CHEBI:28300 (2)
CHEBI:17361 (2)
CHEBI:25017 (2)
CHEBI:16958 (2)
CHEBI:27266 (2)
CHEBI:7916 (2)
CHEBI:16449 (2)
CHEBI:29016 (2)
CHEBI:16027 (2)
CHEBI:18243 (1)
CHEBI:36080 (1)
CHEBI:15422 (1)
CHEBI:39026 (1)
CHEBI:144347 (1)
CHEBI:144346 (1)
CHEBI:144345 (1)
CHEBI:144344 (1)
CHEBI:144342 (1)
CHEBI:144322 (1)
CHEBI:144341 (1)
CHEBI:144340 (1)
CHEBI:144338 (1)
CHEBI:23623 (1)

Metabolite Name

Arginine (5)
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Creatine (4)
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Pro-val (2)
Flumethasone pivalate (2)
His-Ser (2)
Leu-Gln (2)
Ile-Asn (2)
1-stearoyl-rac-glycerol (2)
His-Leu (2)
Dephospho-CoA (2)
Primaquine (2)
Vardenafil (2)
Acetoacetic acid (2)
Melezitose (2)
Forskolin (2)

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2025 (100)
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Modelling Approach

Ordinary differential equation model (6)
Differential equation model (1)
Constraint-based model (1)

Lab affiliation

Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (11)
University of Washington (10)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (7)
BioArCh, University of York, UK (6)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (6)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics & Cognitive Research, Neuroscience Campus Amsterdam, VU University, Amsterdam, The Netherlands (5)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
Tokyo Metropolitan Institute of Medical Science (4)
Agronomy College, Henan Agricultural University, China (4)
European Institute of Oncology (4)
Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bâtiment 23A, 1 avenue de la Terrasse, F-91198 Gif-sur-Yvette cedex, France. (4)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (4)
University of Miami Bascom Palmer Eye Institute (4)
Carnegie Mass Spectrometry Facility (4)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (4)
University of Edinburgh (4)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (4)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (3)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (3)
Division of Cell Matrix Biology & Regenerative Medicine (L5) / Division of Cell Matrix Biology & Regenerative Medicine, University of Manchester (3)
Institut Pasteur Unité "Plasticité du Génome Bactérien" Département Génomes et Génétique 28 rue du Docteur Roux 75724 Paris Cedex 15 (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (3)
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University of Colorado Boulder (3)
Plant Physiology Group Westfälische WIlhelms-Universität Münster Germany (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)

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Model Flag

Non Kinetic (4)

Classification

bacteria (8)
protozoa (4)
fungi (2)
viruses (1)

Modification

N6 (21)
N6-dimethyl-L-lysine (11)
2x(15)N labeled L-lysine (4)
4-tetrahydrothiazine-3-carboxylic acid (4)
4x(15)N labeled L-arginine (3)
56.026215 (2)
4x(2)H labeled dimethylated L-lysine (2)
4 (2)
45.029395 (1)
4'-dihydroxyphenylalanine (1)
4x(2)H labeled dimethylated residue (1)
42.010565 (1)
15.994915 (1)
58.005479 (1)
57.021464 (1)
+3amu) (1)
Not available (1)

Study type

Transcription profiling by array (94)
ChIP-seq (30)
ChIP-chip by tiling array (26)
RNA-seq of coding RNA (21)
Methylation profiling by high throughput sequencing (4)
Comparative genomic hybridization by array (3)
Other (3)
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Methylation profiling by array (3)
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Release Date

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2001 (5)
2004 (4)
2000 (4)
2002 (3)
2003 (1)
1997 (1)

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Pathology tissue-quantitative mass spectrometry analysis to profile histone post-translational modification patterns in patient samples

Histone post-translational modifications (hPTMs) generate a complex combinatorial code that has been implicated with various pathologies, including cancer. Dissecting such a code in physiological and diseased states may be exploited for epigenetic biomarker discovery, but hPTM analysis in clinical s...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090)

2016-08-25 | MSV000080100 | MassIVE

The NAE1-mediated Neddylation operates as an essential post-translational modification checkpoint for effector CD8+ T cells

Cells were lysed with TFA, and precipitated with cold acetone. The precipitates were transferred to E3filters and digestion was performed overnight with trypsin. The peptides were desalted with StageTips, and were analyzed on Eclipse Orbitrap with DIA mode. For MS1, the resolution was set to 120,00...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-02-27 | MSV000094179 | MassIVE

Environmental Conditions Elicit a Slow but Enduring Response of Histone Post-Translational Modifications in Mozambique Tilapia

Histone post-translational modifications (PTMs) are epigenetic marks that operate within the central dogma of molecular biology: upon an environmental stimulus, the histone PTMs surrounding DNA can be changed in a way that modifies gene expression, and, therefore, the abundance and composition of RN...

ORGANISM(S): Oreochromis Mossambicus

2024-12-10 | PXD042718 | panorama

How post-translational modification of nitrogenase is circumvented in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively

Characterization of post-translational modification of nitrogenase in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively. To characterize the effect of yeast extract as nitrogen source on gene expression under nitrogen fixing conditions, expression profiles of wild-type cell...

ORGANISM(S): Rhodopseudomonas palustris

2012-03-15 | E-GEOD-32292 | biostudies-arrayexpress

Posttranslational modification analysis of Histone H3t

Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice.

ORGANISM(S): Mus Musculus (mouse)

2024-09-13 | PXD052428 | JPOST Repository

Systematic characterization of 21 post-translational modification using synthetic peptides

The data presented in this study in the - context of the ProteoemTools project - is based on the synthesis of about 5000 synthetic peptides carrying 21 different post-translational modifications to systematically characterize their chromatographic and mass spectrometric properties using multimodal L...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-04-05 | MSV000091649 | MassIVE

Data for: A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls

Histone proteomics from 5 human cell lines, discussed in publication: "A practical guide for analysis of histone post-translational modifications by mass spectrometry: best practices and pitfalls". Further explanation of data types, methods, and analysis are available in Data Explanation document in...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000084298 | MassIVE

Integrated proteomic analysis of post-translational modifications by serial enrichment.

Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA. Nat Methods 2013, 10, 634-7. doi: 10.1038/nmeth.2518.

2013-12-10 | MSV000078509 | MassIVE

Linking post-translational modifications and protein turnover by site-resolved protein turnover (SPOT) profiling

Proteome-wide measurements of protein turnover have largely ignored the impact of post-translational modifications (PTMs). To address this gap, we employ stable isotope labelling and mass spectrometry to measure the turnover of >120,000 peptidoforms including >33,000 phosphorylated, acetylated, and ...

ORGANISM(S): Homo Sapiens

2022-03-14 | PXD023234 | panorama

Lysinoalanine crosslinking is a conserved post-translational modification in the spirochete flagellar hookLysinoalanine crosslinking is a conserved post-translational modification in the spirochete flagellar hook

In this project, we investigated whether diverse spirochete species contain lysinoalanine cross-linkages between conserved residues in their flagellar hook proteins (FlgE). We examined the following species: Treponema denticola¸ Borreliella burgdorferi, Treponema phagedenis, Treponema pallidum, Brac...

ORGANISM(S): Borrelia sp. BC1

2024-01-26 | PXD045997 | Pride

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