2d lc-msms - OmicsDI

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Proteomics (138)
Metabolomics (7)
Transcriptomics (4)
Unknown (4)
Other (3)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (92)
Allexis (92)
Arabidopsis thaliana (92)
Cyanophora paradoxa (92)
Ensifer adhaerens (92)
Escherichia coli (92)
Globicatella sanguinis (92)
Histomonas meleagridis (92)
Leishmania major strain Friedlin (92)
Listeria monocytogenes (92)
Lotus japonicus (92)
Medicago truncatula (92)
Methylohalobius crimeensis 10Ki (92)
Mus musculus (92)
Mycobacterium tuberculosis (92)
Oryza sativa Indica Group (92)
Physcomitrium patens (92)
Pseudomonas putida KT2440 (92)
Rattus norvegicus (92)
Saccharomyces cerevisiae (92)
Schizosaccharomyces pombe (92)
Schizosaccharomyces pombe 972h- (92)
Shigella (92)
Solanum lycopersicum (92)
Solanum tuberosum (92)
Staphylococcus aureus (92)
Homo sapiens (15)
Escherichia coli (3)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Zea mays (1)

Repository

pride (92)
MassIVE (25)
PeptideAtlas (16)
MetaboLights (7)
biostudies-arrayexpress (4)
GPMDB (3)
PAXDB (3)
jPOST (2)

Tissue

Cell culture (19)
Others (14)
Liver (10)
Epithelial cell (8)
Hepatocyte (7)
Brain (4)
Blood plasma (3)
Blood serum (3)
Leaf (3)
T cell (3)
Cell suspension culture (2)
Cerebellum (2)
Fibroblast (2)
Midgut (2)
Neutrophil (2)
Plant cell (2)
Primary cell (2)
Skeletal muscle (2)
Whole body (2)
Abdominal adipose tissue (1)
Adipose tissue (1)
Adrenal cortex (1)
Ascites (1)
B cell (1)
Biofilm (1)
Blood cell (1)
Breast cancer cell (1)
Colon (1)
Dendritic cell (1)
Early embryonic cell (1)

Disease

Disease free (11)
Breast cancer (7)
Not Available (3)
Asthma (1)
Autoimmune disease of eyes (1)
Bacterial infectious disease (1)
Bronchiolitis obliterans (1)
Chronic bronchitis (1)
Cystic fibrosis (1)
Malignant neoplasm of ovary (1)
Maturity-onset diabetes of the young type 1 (1)
Myocardial ischemia (1)
Severe acute respiratory syndrome (1)
Uveitis (1)
Zika fever (1)

Technology Type

Mass Spectrometry (92)
Shotgun proteomics (56)
Gel-based experiment (18)
Bottom-up proteomics (11)
Mass spectrometry (4)
Data-dependent acquisition (4)
Mass spectrometry assay (3)
Data-independent acquisition (3)
SWATH MS (3)
Top-down proteomics (3)
All-ion fragmentation (2)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (9)
TripleTOF 5600 (7)
LTQ Orbitrap XL (5)
Liquid Chromatography MS - positive - reverse phase (4)
Instrument (3)
LTQ Orbitrap (3)
MS:1000419 (3)
Q Exactive (3)
Q Exactive HF (3)
LTQ FT (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - hilic (3)
MS:1000031 (2)
MS:1000044 (2)
Orbitrap Exploris 480 (2)
Q Exactive HF-X (2)
Liquid Chromatography MS - alternating - hilic (2)
6520A Quadrupole Time-of-Flight LC/MS (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL ETD (1)
LTQ Velos (1)
Synapt G2-S HDMS (1)
TimsTOF Pro 2 (1)
Liquid Chromatography MS - negative - hilic (1)
BrukerDaltonics amaZon ion trap (1)

Publication Date

2017 (19)
2014 (17)
2018 (13)
2015 (12)
2021 (11)
2019 (11)
2020 (11)
2022 (10)
2016 (9)
2026 (9)
2023 (8)
2025 (7)
2013 (6)
2024 (2)
2010 (1)
2008 (1)

UNIPROT ID/AC

35KD_MYCTU (3)
6PGL_MYCTU (3)
A85A_MYCTU (3)
A85B_MYCTU (3)
A85C_MYCTU (3)
ACCD_MYCTU (3)
ACDH_MYCTU (3)
ACDP_MYCTU (3)
ACEA_MYCTU (3)
ACG_MYCTU (3)
ACNA_MYCTU (3)
ACPM_MYCTU (3)
ACPS_MYCTU (3)
ACR_MYCTU (3)
ACYP_MYCTU (3)
ADD_MYCTU (3)
ADHB_MYCTU (3)
ADHC_MYCTU (3)
ADOK_MYCTU (3)
AHPC_MYCTU (3)
AHPD_MYCTU (3)
AHPE_MYCTU (3)
AK_MYCTU (3)
ALDH_MYCTU (3)
ALF_MYCTU (3)
ALR_MYCTU (3)
AMI4_MYCTU (3)
AMPA_MYCTU (3)
APA_MYCTU (3)
APEB_MYCTU (3)

ENSEMBL ID

ENSG00000170477 (14)
ENSG00000247315 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17808 (3)
CHEBI:17609 (3)
CHEBI:34146 (3)
CHEBI:139582 (3)
CHEBI:16964 (3)
CHEBI:16217 (3)
CHEBI:17768 (3)
CHEBI:60175 (3)
CHEBI:70959 (3)
CHEBI:30813 (3)
CHEBI:64575 (3)
CHEBI:64566 (3)
CHEBI:17992 (3)
CHEBI:17202 (3)
CHEBI:16742 (3)
CHEBI:25017 (3)
CHEBI:16566 (3)
CHEBI:17786 (3)
CHEBI:17780 (3)
CHEBI:16410 (3)
CHEBI:52392 (3)
CHEBI:116314 (3)
CHEBI:16393 (3)
CHEBI:30763 (3)
CHEBI:17620 (3)
CHEBI:17362 (3)
CHEBI:17650 (3)
CHEBI:25858 (3)
CHEBI:28946 (3)
CHEBI:18347 (3)

Metabolite Name

Acetylcarnitine (2)
Indole-3-lactic acid (2)
5-HYDROXY-L-TRYPTOPHAN (1)
N-METHYL-L-GLUTAMATE (1)
O-ACETYL-L-CARNITINE (1)
2'-DEOXYCYTIDINE 5'-DIPHOSPHATE (1)
Hydroxyphenanthrene (1)
THIAMINE MONOPHOSPHATE (1)
D-ASPARTATE (1)
PHOSPHONOACETATE (1)
5.6-DIHYDROURACIL (1)
PIPECOLATE (1)
3-AMINO-4-HYDROXYBENZOIC ACID (1)
Lysophosphatidylcholine(17:0) (1)
Lysophosphatidylethanolamine(22:6) (1)
3-HYDROXYKYNURENINE (1)
5-methoxy-3-indoleacetic acid (1)
Lysophosphatidylcholine(18:0) (1)
D-ORNITHINE (1)
S-(5'-ADENOSYL)-L-HOMOCYSTEINE (1)
URIDINE 5'-DIPHOSPHATE_In source of UDP-glucuronic acid (1)
PICOLINIC ACID (1)
Lysophosphatidylcholine(22:6) (1)
15(s)-HETE (1)
12(s)-HETE (1)
5(s)-HETE (1)
S-(5'-Adenosyl)-L-Methionine (1)
INOSINE 5'-DIPHOSPHATE (1)
2'-DEOXYCYTIDINE 5'-MONOPHOSPHATE (1)
Coumaric Acid (1)

Modification

-17.026549 (1)
15.99491 (1)
15.994915 (1)
26.01565 (1)
42.010565 (1)
57.02146 (1)
57.021464 (1)

Study type

Transcription profiling by array (3)
Other (1)

Release Date

2014 (2)
2020 (2)
2010 (1)
2008 (1)
2017 (1)
2009 (1)

Lab affiliation

Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (4)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (3)
Department of Translational Research in Psychiatry Max Planck Institute of Psychiatry, Munich (2)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (2)
Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branisovska 1160/31, 37005 Ceske Budejovice, Czech Republic (2)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, france (2)
University of Copenhagen, Section of Microbiology (2)
1. Istitituto Sperimentale Italiano L. Spallanzani,Milano, Italy; 2. Dipartimento di Scienze Veterinarie e Sanità Pubblica, Università degli Studi di Milano, Milano, Italy. (1)
Bioanalytical Mass Spectrometry Research Group Chemistry Department, Université du Québec à Montréal (UQÀM) Montréal (Québec) Canada (1)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Université du Québec à Montréal (UQÀM) Montréal (Québec) Canada (1)
Biochemistry (1)
Bioprocessing Technology Institute (BTI), Agency for Science, Technology and Research (A*STAR), 138668, Singapore. (1)
Cancer Metabolism and Tumor Microenvironment Group, Laboratory of Tumor and Development Biology, GIGA-Cancer, GIGA institute, University of Liege, Liege, Belgium (1)
Cellzome - a GSK company Target Discovery Meyerhofstrasse 1 69117 HEIDELBERG (1)
Centre for Infection and Immunity, Queen’s University Belfast, Belfast, Northern Ireland, BT9 7BL, UK. (1)
College of Agronomy, Henan Agricultural University/Collaborative Innovation Center of Henan Grain Crops, Zhengzhou 450002, China (1)
D.Sc., associate professor Head of Laboratory of Genetic Engineering Research Institute of Physical-Chemical Medicine (1)
Departamento de Biotecnología Microbiana, Centro Nacional de Biotecnología, CSIC, Madrid, Spain. (1)
Department of Autoimmunology and Biomarkers, Statens Serum Institut, Denmark (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (1)
Department of Biomedicine, Aarhus University, Arhus, Denmark (1)
Department of Chemistry, Korea University, Seoul 02841, Republic of Korea (1)
Department of Civil and Environmental Engineering, National University of Singapore, Singapore (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Microbiology The Ohio State University Columbus OH 43210 (1)
Department of Microbiology, The Ohio State University, Columbus OH (1)
Department of Oncology-Pathology (OnkPat) (PI) (1)
Department of Translational Research in Psychiatry, Proteomics Core Unit, Max Planck Institute of Psychiatry, Germany (1)
Department of Veterinary Sciences, Ludwig-Maximilians-University of Munich, Munich, Germany Department of Experimental Ophthalmology, Philipps University of Marburg, Marburg, Germany (1)

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Quantitative serum proteomics using dual stable isotope coding and nano LC-MS/MSMS.

Not available

S-EPMC4684172 | biostudies-literature

Examination of protein expression patterns of closely related Salmonella serovars using 2D GE and MS/MS

The objective of the present investigation was to consider the level of variation in the protein expression patterns of closely related Salmonella serovars, in order to search for protein factors with levels of expression or posttranslational modifications characteristic for each serovar. For the co...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Enteritidis

2008-02-26 | E-GEOD-8931 | biostudies-arrayexpress

Brown bear skeletal muscle 2D-DIGE-LC-MSMS

Muscle atrophy is one of the main deleterious consequences of ageing and physical inactivity. Although basic knowledge regarding the underlying mechanisms of muscle atrophy is continuously growing, there are still no efficient therapeutic strategies for its prevention and treatment. Hibernating bear...

ORGANISM(S): Ursus arctos arctos (European brown bear)

2019-05-14 | PXD011687 | Pride

Mouse retina LC-MSMS - Diurnal expression of proteins in the retina of the blind cone-rod homeobox (Crx(-/-) ) mouse and the 129/Sv mouse: a proteomic study

To investigate the role of the circadian clock of the photoreceptor cells in regulation of retinal protein rhythms, we have analyzed diurnal protein expression in the photoreceptor-deficient cone-rod homeobox knock out mouse (Crx-/-). Retinal homogenates of 129/sv and Crx-/- mice were analysed by 2D...

ORGANISM(S): Mus musculus (Mouse)

2017-04-04 | PXD005556 | Pride

Lc-msms Retina Mouse 2d-page

Proteomic Analysis of Rat Liver Microsomes by 2D-LC-MSMS

Liver plays a crucial role in numerous metabolic processes and therefore is the primary target of study in drug discovery and molecular toxicology. Devising an appropriate analytical strategy for an efficient analysis of the liver samples has been a major concern in proteomics. The aim of this study...

ORGANISM(S): Rattus norvegicus (Rat)

2015-03-26 | PXD000720 | Pride

2d-lc-msms Tripletof Rat liver microsomes Proteinpilot

Proteomic Analysis of Human Liver Microsomes by 2D-LC-MSMS

ORGANISM(S): Homo sapiens (Human)

2015-03-26 | PXD000721 | Pride

2d-lc-msms Tripletof Proteinpilot Human liver microsomes

Proteomic Analysis of Mouse Liver Microsomes by 2D-LC-MSMS

ORGANISM(S): Mus musculus (Mouse)

2015-03-26 | PXD000731 | Pride

Mouse liver microsomes 2d-lc-msms Tripletof Proteinpilot

Proteomic Analysis of Rat Liver S9 Fraction by 2D-LC-MSMS

ORGANISM(S): Rattus norvegicus (Rat)

2015-03-26 | PXD000717 | Pride

2d-lc-msms Tripletof Proteinpilot Rat liver s9 fraction

Proteomic Analysis of Human Liver S9 Fraction by 2D-LC-MSMS

ORGANISM(S): Homo sapiens (Human)

2015-03-26 | PXD000734 | Pride

Human liver s9 fraction 2d-lc-msms Tripletof Proteinpilot

Proteomic Analysis of Mouse Liver S9 Fraction by 2D-LC-MSMS

ORGANISM(S): Mus musculus (Mouse)

2015-03-26 | PXD000733 | Pride

Mouse liver s9 fraction 2d-lc-msms Tripletof Proteinpilot

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156 Results

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