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TranscriptomicsTranscription profiling of E. coli wild type and hns strains in rich dYT medium sampled in mid-exponential phase (ME), transition to stationary (TS) and late stationary phase (LS)
Growth curves wt and hns strains in rich dYT medium. Sample in Mid-exponential phase (ME), Transition to Stationary (TS) and Late Stationary phase (LS).
ORGANISM(S): Escherichia coli 
2005-10-31 | E-MEXP-464 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli CSH50 wild type and fis strains grown in dYT at 37 degrees C
E. coli CSH50 wildtype and fis strains grown in dYT at 37
ORGANISM(S): Escherichia coli 
2005-11-11 | E-MEXP-465 | biostudies-arrayexpress
no omics definedTranscription profiling of E. coli LZ41 and LZ54 strains containing drug-resistant alleles of different topoisomerase genes treated with norfloxacin
Effect of FIS and H-NS on gene expression at relexed and hypernagative supercoiling level using LZ41 and LZ54 strains. LZ41 and LZ54 strains contain drug-resistant alleles of different topoisomerase genes. LZ41 strain treatment norfloxacin strongly relaxes DNA, whereas in LZ54 strain the same trea...
ORGANISM(S): Escherichia coli 
2005-11-01 | E-MEXP-462 | biostudies-arrayexpress
no omics definedTranscription profiling of E. coli LZ41 and LZ54 strains containing drug-resistant alleles of different topoisomerase genes treated with norfloxacin
Effect of supercoiling level on gene expression using LZ41 and LZ54 strains containing drug-resistant alleles of different topoisomerase genes. LZ41 strain treatment with norfloxacin strongly relaxes DNA, whereas in LZ54 strain the same treatment generates high negative supercoiling (Khodursky et al...
ORGANISM(S): Escherichia coli 
2005-11-05 | E-MEXP-463 | biostudies-arrayexpress
ProteomicsRepeated sprint training in hypoxia potentiates muscle glycolytic adaptations through S100A protein signaling
Objective: Athletes increasingly engage in repeated sprint training that consists of repeated short all-out effort interspersed by short periods of recovery. When performed in hypoxia (RSH), it may lead to greater training effects than in normoxia (RSN), however the underlying molecular mechanisms r...
ORGANISM(S): Homo sapiens (Human) 
2024-05-05 | PXD040779 | Pride
Exercise Oxphos S100a13 Rsh Glycolysis 
ProteomicsThe Kinase CK1a coordinates Initiation and Termination of the cGAS-STING Pathway
The cGAS-STING pathway is an evolutionarily conserved antimicrobial defense mechanism that senses cytosolic DNA to trigger innate immune responses. cGAS and STING play dual roles in tumorigenesis, promoting antitumor immunity and cell death while fueling tumor growth and metastasis. However, the mec...
ORGANISM(S): Homo sapiens (Human) 
2026-09-10 | PXD063855 | Pride
Biotin Apex Lc-ms Cgas/ting Ap-ms Ck1-alpha 
TranscriptomicsExtracellular vesicles (EV) secreted by embryonic stem cell-derived cardiovascular progenitor cells (hES-CPg) recapitulate the therapeutic effects of these cells in a model of chronic heart failure (CHF).
Background: We have found that extracellular vesicles (EV) secreted by embryonic stem cell-derived cardiovascular progenitor cells (hES-CPg) recapitulate the therapeutic effects of these cells in a model of chronic heart failure (CHF). Objectives: Our goal was to test other cellular sources of EV an...
ORGANISM(S): Mus musculus 
2017-10-06 | E-MTAB-5164 | biostudies-arrayexpress
TranscriptomicsOvary small RNA
We sequenced small RNA from total RNA samples in two siRNA-pathway mutants in fly ovaries. This submission comes from a modENCODE project. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal...
ORGANISM(S): Drosophila melanogaster 
2010-12-13 | E-GEOD-25570 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation to identify CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis eggs
Identification of RNA bound to the RNA-binding protein CUGBP1/EDENBP in Xenopus tropicalis eggs.
ORGANISM(S): Xenopus tropicalis 
2008-02-21 | E-MEXP-1466 | biostudies-arrayexpress
TranscriptomicsOJeanJean_eRF3a_ATF4
We previously showed that eRF3a depletion in the human colon carcinoma cell line HCT116 p53+/+ induces mTOR signaling pathway inhibition (Chauvin et al., 2007) suggesting that eRF3a belongs to a regulatory mechanism that modulate mTOR activity. However, this mechanism and the precise role of eRF3a r...
ORGANISM(S): Homo sapiens 
2012-08-30 | E-MEXP-3512 | biostudies-arrayexpress
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