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MetabolomicsSimultaneous Membrane and RNA Binding by Tick-Borne Encephalitis Virus Capsid Protein

Tick-borne encephalitis virus is an enveloped, pathogenic, RNA virus in the family Flaviviridae, genus Flavivirus. Viral particles are formed when the nucleocapsid, consisting of an RNA genome and multiple copies of the capsid protein, buds through the endoplasmic reticulum membrane and acquires ...

2023-01-06 | MTBLS6076 | MetaboLights
ProteomicsCellular proteins interacting with curved HIV-1 capsid lattices
Early events of HIV-1 lifecycle, such as post-entry virus trafficking, uncoating and nuclear import, remain poorly understood due to limited information about virus-host interactions. We used a multidisciplinary approach. First, a mass spectrometry (MS)-based proteomics methodology enabled us to ide...
ORGANISM(S): Homo sapiens (Human) 
2021-01-04 | PXD020970 | Pride
Hiv-1 Proteomics Human proteins Capsid 
TranscriptomicsExpression data from the hepatitis E virus capsid protein
The hepatitis E virus (HEV), a non enveloped RNA virus, causes viral hepatitis. The viral open reading frame 2 (ORF2) protein represents the capsid protein of HEV which is known to cause endoplasmic reticulum stress in ORF2 expressing cells. The initiation of endoplasmic reticulum stress induced apo...
ORGANISM(S): Homo sapiens 
2012-12-01 | E-GEOD-29061 | biostudies-arrayexpress
ProteomicsTop-down mass spectrometry analysis of capsid proteins of recombinant adeno-associated virus using multiple ion activations and proton transfer charge reduction
Here, we present our investigation of the viral proteins of the capsid of adeno-associated viruses via top-down mass spectrometry on the LC timescale. Characterization was improved through the use of proton transfer charge reduction
ORGANISM(S): Human Aav 
2024-06-14 | MSV000095045 | MassIVE
GenomicsAnalysis of VEEV Capsid Interaction Sites
Analysis of VEEV Capsid Interaction Sites
PRJNA545986 | ENA
ProteomicsIdentification of dArc binding partners from mouse C2C12 cells
This project encompasses co-IP mass spectrometry results using anti-dArc or isotype antibodies to pulldown dArc capsid binding partners from whole cell lysate of C2C12 cells
ORGANISM(S): Mus musculus (Mouse) Drosophila melanogaster (Fruit fly) 
2026-08-19 | PXD075863 | Pride
Darc Coip C2c12 Capsid 
ProteomicsDegraders of the dengue virus capsid protein exhibit differentiated pharmacology relative to capsid inhibitors
Due to the limited size of viral genomes, most viral proteins are multifunctional; yet most direct-acting antivirals are designed as single-function inhibitors. The dengue virus (DENV) capsid protein serves as a building block for new virions while also interacting with multiple host factors to remo...
ORGANISM(S): Homo sapiens (Human) 
2026-03-30 | PXD063557 | Pride
Degrader Dengue Capsin Virus Crbn Chemical biology Protac Ubiquitin 
GenomicsYFV Capsid changes to mRNA transcriptome of Huh7 cells
YFV Capsid changes to mRNA transcriptome of Huh7 cells
PRJNA639796 | ENA
GenomicsChromatin accessibility analysis of Huh7 cells upon YFV capsid expression
Chromatin accessibility analysis of Huh7 cells upon YFV capsid expression
PRJNA639846 | ENA
Proteomics"Analysis of Zika virus capsid-Aedes aegypti mosquito interactome reveals pro-viral host factors critical for establishing infection"
The emergence of mosquito-borne diseases because of climate change emphasizes the need to study arbovirus-vector protein-protein interactions (PPI) to better understand viral replication and transmission. One such human pathogenic arbovirus is Zika virus (ZIKV; Flaviviridae), transmitted by Aedes ae...
ORGANISM(S): Aedes aegypti 
2021-03-21 | PXD020565 | Pride
Ter94 Upp Aedes aegypti Vcp Zika virus Capsid Protein-protein interactions 
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