21 Results
Show all Save search Copy queryShow results for
Organisms
Repository
Tissue
Disease
Technology Type
Instrument Platform
Publication Date
CHEBI ID
Metabolite Name
Modification
Lab affiliation
Data from ProteomeXchange, PXD ID: PXD001187. Enzyme: LysC_Trypsin, file: 121219_S_CCES_01_03_LysC_Try_1to10_Mixt_1_3.mzXML. Published as part of J Proteome Res. 2014 Jul 28 . From the Abstract: {{i}} Here we evaluated both in-solution and filter-aided digestion protocols and assessed their influen...
ORGANISM(S): Enterobacteria_phage_13a_uid30603,enterobacteria_phage_933w_uid14043,enterobacteria_phage_alpha3_uid14570,enterobacteria_phage_ba14_uid30599,enterobacteria_phage_bp_4795_uid14287,enterobacteria_phage_bz13_uid14635,enterobacteria_phage_cdti_uid19737,enterobacteria_phage_ecods1_uid30601,enterobacteria_phage_eps7_uid29287,enterobacteria_phage_epsilon15_uid14285,enterobacteria_phage_es18_uid15174,enterobacteria_phage_felix_01_uid14323,enterobacteria_phage_fels_2_uid32273,enterobacteria_phage_fi_sensu_lato_uid15459,enterobacteria_phage_g4_sensu_lato_uid14318,enterobacteria_phage_hk022_uid14048,enterobacteria_phage_hk620_uid14115,enterobacteria_phage_hk97_uid14592,enterobacteria_phage_i2_2_uid14572,enterobacteria_phage_id18_sensu_lato_uid16628,enterobacteria_phage_id2_moscow_id_2001_uid16591,enterobacteria_phage_if1_uid14039,enterobacteria_phage_ike_uid14627,enterobacteria_phage_ime08_uid50177,enterobacteria_phage_jk06_uid15569,enterobacteria_phage_js10_uid38265,enterobacteria_phage_js98_uid27983,enterobacteria_phage_jse_uid38263,enterobacteria_phage_k1e_uid16228,enterobacteria_phage_k1f_uid15880,enterobacteria_phage_k1_5_uid17059,enterobacteria_phage_lambda_uid14204,enterobacteria_phage_m13_uid14549,enterobacteria_phage_min27_uid29143,enterobacteria_phage_ms2_uid14659,enterobacteria_phage_mu_uid14105,enterobacteria_phage_n15_uid14086,enterobacteria_phage_n4_uid18511,enterobacteria_phage_p1_uid14493,enterobacteria_phage_p22_uid14478,enterobacteria_phage_p2_uid14035,enterobacteria_phage_p4_uid14414,enterobacteria_phage_phi1_uid20789,enterobacteria_phage_phieco32_uid28729,enterobacteria_phage_phiecom_gj1_uid27979,enterobacteria_phage_phip27_uid14599,enterobacteria_phage_phiv10_uid16381,enterobacteria_phage_phix174_sensu_lato_uid14015,enterobacteria_phage_prd1_uid14062,enterobacteria_phage_psp3_uid14345,enterobacteria_phage_rb14_uid37825,enterobacteria_phage_rb16_uid51699,enterobacteria_phage_rb32_uid17997,enterobacteria_phage_rb43_uid15417,enterobacteria_phage_rb49_uid14301,enterobacteria_phage_rb51_uid37819,enterobacteria_phage_rb69_uid15141,enterobacteria_phage_rtp_uid16178,enterobacteria_phage_sf6_uid14498,enterobacteria_phage_sfv_uid14162,enterobacteria_phage_sp6_uid14291,enterobacteria_phage_ssl_2009a_uid34919,enterobacteria_phage_st104_uid14499,enterobacteria_phage_st64t_uid14230,enterobacteria_phage_st_1_uid38669,enterobacteria_phage_t1_uid14496,enterobacteria_phage_t3_uid14336,enterobacteria_phage_t4_uid14044,enterobacteria_phage_t5_uid15143,enterobacteria_phage_t7_uid14460,enterobacteria_phage_tls_uid19775,enterobacteria_phage_vt2_sakai_uid14480,enterobacteria_phage_wa13_sensu_lato_uid16595,enterobacteria_phage_wv8_uid38281,enterobacteria_phage_yyz_2008_uid32231,enterobacteriophage_qbeta_uid15479, Pxd001187, Escherichia_coli_k_12_substr__mg1655
In this project we want to compare ovarian cell cancer treated or non treated with cis-platinum. As acquisition strategy we have used a Real Time Search MS3 method in an Orbitrap Eclipse. The acquisition cycle began with an MS1 scanwhere the most intense ions were selected for fragmentation in the i...
ORGANISM(S): Homo sapiens (Human)
Quantitative determination of absolute and relative protein amounts is an essential requirement for most current bottom-up proteomics applications, but protein quantitation estimates are affected by several sources of variability such as sample preparation, mass spectrometric acquisition, and data a...
ORGANISM(S): Escherichia coli
Botrytis cinerea is a model phytopathogenic fungus that infects more than 200 different relevant crops, thus being classified among the top ten fungal plant diseases. B. cinerea exhibits a wide arsenal of tools to infect plant tissues. Most of these factors are related to signal transduction cascade...
ORGANISM(S): Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea) Capsaspora owczarzaki
The phytopathogen Botrytis cinerea is a ubiquitous fungus with a high capacity to adapt its metabolism to different hosts and environmental conditions in order to deploy a variety of virulence and pathogenicity factors and develop a successful plant infection. Here we report the first comparative ph...
ORGANISM(S): Botryotinia fuckeliana (Noble rot fungus) (Botrytis cinerea)
The RNA-binding protein CSDE1 is a key regulator of mRNA stability and translation in a broad spectrum of biological processes. We have previously shown that CSDE1 functions as an oncoprotein promoting invasion and metastasis in melanoma, whereas it behaves as a tumour suppressor promoting cellular ...
ORGANISM(S): Homo sapiens (Human)
Recent evidence that the unicellular ancestor of animals had a complex repertoire of genes linked to multicellular processes suggests that changes in the regulatory genome, rather than gene innovation, were key to the origin of animals. Here, we carry out multiple functional genomic assays in Capsas...
ORGANISM(S): Capsaspora owczarzaki
Histones and associated chromatin proteins have essential functions in eukaryotic genome organization and regulation. Despite this fundamental role in eukaryotic cell biology, we lack a phylogenetically-comprehensive understanding of chromatin evolution. Here, we combine comparative proteomics and g...
ORGANISM(S): Acanthamoeba castellanii Sycon ciliatum Phytophthora infestans Thecamonas trahens Dictyostelium discoideum (Slime mold) Chlamydomonas reinhardtii Physcomitrella Nitrososphaera viennensis Bigelowiella natans Homo sapiens (Human) Methanobrevibacter cuticularis Gefionella okellyi Corallochytrium limacisporum Guillardia theta Naegleria gruberi Capsaspora owczarzaki Emiliania huxleyi Spizellomyces punctatus Methanospirillum stamsii Thalassiosira pseudonana Fabomonas tropica
Mass spectrometry (MS)-based proteomics is known for its high accuracy in quantifying peptides and proteins using various calibration strategies, including internal and external calibration curves. While external multi-point calibration curves are created from serial dilutions, they often fail to ac...
ORGANISM(S): Homo sapiens (Human)