Chromatin proteome

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UNIPROT ID/AC

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ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
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protozoa (5)
bacteria (1)

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2x(15)N labeled L-lysine (1)
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Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (17)
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RNA-seq of non coding RNA from single cells (1)
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Single nucleus RNA sequencing (1)
RNA-seq of coding RNA from single cells (1)
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2021 (38)
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2014 (32)
2013 (32)
2023 (32)
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2020 (30)
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2005 (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (25)
Centre for Genomic Regulation (14)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (7)
Head of the Curie Institute Mass Spectrometry Platform (6)
University of Edinburgh (6)
Department of Biological Sciences, Vanderbilt University (4)
Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (4)
Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany. (4)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
Babraham Institute (3)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (3)
Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais (3)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (3)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (3)
Functional Proteomics, ICR (3)
Institute of Biomedicine, University of Eastern Finland, Finland (3)
Institute of Molecular Biology (IMB), Mainz, Germany (3)
Kubicek lab, Principal Investigator, Head of Molecular Discovery Platform, CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria (3)
The Institute of Cancer Research (3)
WCCB, University of Edinburgh (3)
Babraham Research Campus, Cambridge, UK (2)
CABIMER (2)
CECAD Excellence Center, University of Cologne, Germany, D-50931 Center for Physiology and Pathophysiology, Faculty of Medicine and University Hospital Cologne, University of Cologne, Germany, D-50931 (2)
CRG, UPF (2)
Carnegie Mass Spectrometry Facility (2)
Cell and Chemical Biology Leiden University Medical Center The Netherlands (2)
Centre for Ocular Regeneration (CORE), Prof. Brien Holden Eye Research Centre (BHERC), L V Prasad Eye Institute, Hyderabad, Telangana, India (2)
Chair, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA (2)
Chromosome and Plasmid Segregation Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India (2)

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Chromatin capture links the metabolic enzyme AHCY to stem cell proliferation

Profiling the chromatin-bound proteome (chromatome) in a simple, direct, and reliable manner might be key to uncovering the role of yet uncharacterized chromatin factors in physiology and disease. Here, we have design an experimental strategy to survey the chromatome of proliferating cells by using ...

ORGANISM(S): Mus musculus (Mouse)

2019-03-13 | PXD011670 | Pride

Chromatin-associated proteome S. cerevisiae

Chromatin-associated and RNA-dependent Chromatin-associated proteome from S. cerevisiae, obtained by a new method yChEFs(yeast Chromatin Enriched Fractions)

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2019-07-17 | PXD009264 | Pride

Processing Rna Chromatin S. cerevisiae

Linking chromatin acylation mark-defined proteome and genome in living cells

PRJNA842563 | ENA

Linking chromatin acylation mark-defined proteome and genome in living cells

PRJNA780303 | ENA

Linking chromatin acylation mark-defined proteome and genome in living cells

PRJNA842564 | ENA

Linking chromatin acylation mark-defined proteome and genome in living cells

PRJNA842559 | ENA

Linking chromatin acylation mark-defined proteome and genome in living cells

PRJNA780304 | ENA

Bridgin connects the outer kinetochore to centromeric chromatin

In this project, 3XFlag-tagged protein affinity purifications were performed to identify the protein-protein interactors using Cryptococcus neoformans cell lysate. After fractionation with SDS-PAGE, peptide samples for nanoLC-MS/MS were prepared by in-gel digestion. Raw data from Orbotrap Velos pr...

ORGANISM(S): Cryptococcus Neoformans

2020-09-23 | PXD021072 | JPOST Repository

Chromatin proteome of S-phase in IgG- and DONSON-depleted egg extract

The aim of the project was to analyse the role of DONSON during DNA replication reaction in Xenopus laevis egg extract. To test what is the impact of DONSON on replication we decided to remove DONSON from egg extract by immunodepletion and analyse its impact on DNA replication reaction. In the paral...

ORGANISM(S): Xenopus laevis (African clawed frog)

2023-10-24 | PXD042435 | Pride

Replication initiation Xenopus Donson Chromatin

Characterization of chromatin associated RNA-binding proteins by SPACE

Chromatin processes such as DNA replication, transcription and RNA processing are mediated by intermolecular transactions among proteins, RNAs and the genome. Although DNA-protein and RNA-protein interactions have been studied extensively, reliable and efficient identification of chromatin-associate...

ORGANISM(S): Mus musculus (Mouse)

2021-11-25 | PXD023903 | Pride

Proteomics Pluripotency Idr Chromatin Dazl Rbp

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1689 Results

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